Difference between revisions of "Damaged-DNA-Pyrimidine"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.5.1.98-RXN 3.5.1.98-RXN] == * direction: ** REVERSIBLE * common name: ** sir2-family_protein_hdac...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=HYDROXYMETHYLGLUTARYL-COA-LYASE-RXN HYDROXYMETHYLGLUTARYL-COA-LYASE-RXN] == * direction: ** LEFT-TO...")
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.5.1.98-RXN 3.5.1.98-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=HYDROXYMETHYLGLUTARYL-COA-LYASE-RXN HYDROXYMETHYLGLUTARYL-COA-LYASE-RXN] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
−
* common name:
+
−
** sir2-family_protein_hdac1
+
−
** histone_deacetylase
+
−
** ORF
+
−
** histone_deacetylase_7a
+
−
** histone_deacetylase_1
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/3.5.1.98 EC-3.5.1.98]
+
** [http://enzyme.expasy.org/EC/4.1.3.4 EC-4.1.3.4]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[WATER]][c] '''+''' 1 [[Histone-Acetyl-Lysine]][c] '''<=>''' 1 [[ACET]][c] '''+''' 1 [[Histone-L-lysine]][c]
+
** 1 [[3-HYDROXY-3-METHYL-GLUTARYL-COA]][c] '''=>''' 1 [[ACETYL-COA]][c] '''+''' 1 [[3-KETOBUTYRATE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 H2O[c] '''+''' 1 a [histone]-N6-acetyl-L-lysine[c] '''<=>''' 1 acetate[c] '''+''' 1 a [histone]-L-lysine[c]
+
** 1 (S)-3-hydroxy-3-methylglutaryl-CoA[c] '''=>''' 1 acetyl-CoA[c] '''+''' 1 acetoacetate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_727]]
+
* [[Tiso_gene_3769]]
−
** IN-SILICO_ANNOTATION
+
** [[pantograph]]-[[athaliana]]
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_17340]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_17377]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_275]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_10459]]
+
−
** IN-SILICO_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
* [[Tiso_gene_19850]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_18096]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_17880]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_3315]]
+
−
** IN-SILICO_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
* [[Tiso_gene_12946]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_16490]]
+
−
** IN-SILICO_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
* [[Tiso_gene_12131]]
+
−
** IN-SILICO_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
* [[Tiso_gene_18920]]
+
 
** [[pantograph]]-[[esiliculosus]]
 
** [[pantograph]]-[[esiliculosus]]
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY66-367]], ketogenesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-367 PWY66-367]
 +
** '''5''' reactions found over '''5''' reactions in the full pathway
 +
* [[LEU-DEG2-PWY]], L-leucine degradation I: [http://metacyc.org/META/NEW-IMAGE?object=LEU-DEG2-PWY LEU-DEG2-PWY]
 +
** '''6''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-5074]], mevalonate degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5074 PWY-5074]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-athaliana]]
−
*** [[esiliculosus]]
+
*** Tool: [[pantograph]]
−
* [[annotation]]:
+
** Source: [[orthology-esiliculosus]]
−
** [[pathwaytools]]:
+
*** Tool: [[pantograph]]
−
*** [[experimental_annotation]]
+
* Category: [[annotation]]
−
*** [[in-silico_annotation]]
+
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
{{#set: direction=REVERSIBLE}}
+
* RHEA:
−
{{#set: common name=sir2-family_protein_hdac1}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24404 24404]
−
{{#set: common name=histone_deacetylase}}
+
* LIGAND-RXN:
−
{{#set: common name=ORF}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R01360 R01360]
−
{{#set: common name=histone_deacetylase_7a}}
+
* UNIPROT:
−
{{#set: common name=histone_deacetylase_1}}
+
** [http://www.uniprot.org/uniprot/P35914 P35914]
−
{{#set: ec number=EC-3.5.1.98}}
+
** [http://www.uniprot.org/uniprot/P35915 P35915]
−
{{#set: gene associated=Tiso_gene_727|Tiso_gene_17340|Tiso_gene_17377|Tiso_gene_275|Tiso_gene_10459|Tiso_gene_19850|Tiso_gene_18096|Tiso_gene_17880|Tiso_gene_3315|Tiso_gene_12946|Tiso_gene_16490|Tiso_gene_12131|Tiso_gene_18920}}
+
** [http://www.uniprot.org/uniprot/Q8L7K2 Q8L7K2]
−
{{#set: in pathway=}}
+
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: ec number=EC-4.1.3.4}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: gene associated=Tiso_gene_3769}}
−
{{#set: reconstruction source=esiliculosus}}
+
{{#set: in pathway=PWY66-367|LEU-DEG2-PWY|PWY-5074}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction source=annotation-experimental_annotation|orthology-athaliana|annotation-in-silico_annotation|orthology-esiliculosus}}
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 18:51, 18 March 2018

Reaction HYDROXYMETHYLGLUTARYL-COA-LYASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY66-367, ketogenesis: PWY66-367
    • 5 reactions found over 5 reactions in the full pathway
  • LEU-DEG2-PWY, L-leucine degradation I: LEU-DEG2-PWY
    • 6 reactions found over 6 reactions in the full pathway
  • PWY-5074, mevalonate degradation: PWY-5074
    • 1 reactions found over 2 reactions in the full pathway

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Damaged-DNA-Pyrimidine&oldid=27355"