Difference between revisions of "2-KETO-3-METHYL-VALERATE"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DXS-RXN DXS-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** 1-deoxy-d-xylulose_5-phosphate_...")
(Created page with "Category:Gene == Gene Tiso_gene_13959 == * left end position: ** 3790 * transcription direction: ** NEGATIVE * right end position: ** 5494 * centisome position: ** 45.2483...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DXS-RXN DXS-RXN] ==
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== Gene Tiso_gene_13959 ==
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* direction:
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* left end position:
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** LEFT-TO-RIGHT
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** 3790
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* common name:
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* transcription direction:
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** 1-deoxy-d-xylulose_5-phosphate_chloroplast
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** NEGATIVE
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* ec number:
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* right end position:
−
** [http://enzyme.expasy.org/EC/2.2.1.7 EC-2.2.1.7]
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** 5494
 +
* centisome position:
 +
** 45.24833   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* [[1-ACYLGLYCEROL-3-P-ACYLTRANSFER-RXN]]
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** 1 [[PROTON]][c] '''+''' 1 [[PYRUVATE]][c] '''+''' 1 [[GAP]][c] '''=>''' 1 [[DEOXYXYLULOSE-5P]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
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** in-silico_annotation
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* With common name(s):
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***ec-number
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** 1 H+[c] '''+''' 1 pyruvate[c] '''+''' 1 D-glyceraldehyde 3-phosphate[c] '''=>''' 1 1-deoxy-D-xylulose 5-phosphate[c] '''+''' 1 CO2[c]
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** experimental_annotation
−
 
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***ec-number
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== Genes associated with this reaction  ==
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** [[pantograph]]-[[esiliculosus]]
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Genes have been associated with this reaction based on different elements listed below.
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* [[RXN-15043]]
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* [[Tiso_gene_17311]]
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** in-silico_annotation
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** IN-SILICO_ANNOTATION
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***ec-number
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***EC-NUMBER
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** experimental_annotation
−
** EXPERIMENTAL_ANNOTATION
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***ec-number
−
***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
−
** [[pantograph]]-[[athaliana]]
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* [[RXN-16025]]
−
** [[pantograph]]-[[synechocystis]]
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** in-silico_annotation
 +
***ec-number
 +
** experimental_annotation
 +
***ec-number
 +
* [[RXN-16032]]
 +
** in-silico_annotation
 +
***ec-number
 +
** experimental_annotation
 +
***ec-number
 +
* [[RXN-16066]]
 +
** in-silico_annotation
 +
***ec-number
 +
** experimental_annotation
 +
***ec-number
 +
* [[RXN-16067]]
 +
** in-silico_annotation
 +
***ec-number
 +
** experimental_annotation
 +
***ec-number
 +
* [[RXN-16076]]
 +
** in-silico_annotation
 +
***ec-number
 +
** experimental_annotation
 +
***ec-number
 +
* [[RXN-16077]]
 +
** in-silico_annotation
 +
***ec-number
 +
** experimental_annotation
 +
***ec-number
 +
* [[RXN-16118]]
 +
** in-silico_annotation
 +
***ec-number
 +
** experimental_annotation
 +
***ec-number
 +
* [[RXN-1623]]
 +
** in-silico_annotation
 +
***ec-number
 +
** experimental_annotation
 +
***ec-number
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[RXN-17008]]
 +
** in-silico_annotation
 +
***ec-number
 +
** experimental_annotation
 +
***ec-number
 +
* [[RXN-17009]]
 +
** in-silico_annotation
 +
***ec-number
 +
** experimental_annotation
 +
***ec-number
 +
* [[RXN-17010]]
 +
** in-silico_annotation
 +
***ec-number
 +
** experimental_annotation
 +
***ec-number
 +
* [[RXN-17011]]
 +
** in-silico_annotation
 +
***ec-number
 +
** experimental_annotation
 +
***ec-number
 +
* [[RXN-17012]]
 +
** in-silico_annotation
 +
***ec-number
 +
** experimental_annotation
 +
***ec-number
 +
* [[RXN-17013]]
 +
** in-silico_annotation
 +
***ec-number
 +
** experimental_annotation
 +
***ec-number
 +
* [[RXN-17014]]
 +
** in-silico_annotation
 +
***ec-number
 +
** experimental_annotation
 +
***ec-number
 +
* [[RXN-17015]]
 +
** in-silico_annotation
 +
***ec-number
 +
** experimental_annotation
 +
***ec-number
 +
* [[RXN-17019]]
 +
** in-silico_annotation
 +
***ec-number
 +
** experimental_annotation
 +
***ec-number
 +
* [[RXN-17020]]
 +
** in-silico_annotation
 +
***ec-number
 +
** experimental_annotation
 +
***ec-number
 +
* [[RXN-17021]]
 +
** in-silico_annotation
 +
***ec-number
 +
** experimental_annotation
 +
***ec-number
 +
* [[RXN-17022]]
 +
** in-silico_annotation
 +
***ec-number
 +
** experimental_annotation
 +
***ec-number
 +
* [[RXN-17023]]
 +
** in-silico_annotation
 +
***ec-number
 +
** experimental_annotation
 +
***ec-number
 +
* [[RXN-17024]]
 +
** in-silico_annotation
 +
***ec-number
 +
** experimental_annotation
 +
***ec-number
 +
* [[RXN-17729]]
 +
** in-silico_annotation
 +
***ec-number
 +
** experimental_annotation
 +
***ec-number
 +
* [[RXN0-5514]]
 +
** in-silico_annotation
 +
***ec-number
 +
** experimental_annotation
 +
***ec-number
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[RXN0-6705]]
 +
** in-silico_annotation
 +
***ec-number
 +
** experimental_annotation
 +
***ec-number
 
** [[pantograph]]-[[esiliculosus]]
 
** [[pantograph]]-[[esiliculosus]]
−
** [[pantograph]]-[[creinhardtii]]
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== Pathways associated ==
−
== Pathways ==
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* [[TRIGLSYN-PWY]]
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* [[NONMEVIPP-PWY]], methylerythritol phosphate pathway I: [http://metacyc.org/META/NEW-IMAGE?object=NONMEVIPP-PWY NONMEVIPP-PWY]
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* [[PWY-7411]]
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** '''9''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-7589]]
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* [[PYRIDOXSYN-PWY]], pyridoxal 5'-phosphate biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PYRIDOXSYN-PWY PYRIDOXSYN-PWY]
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* [[PWY-7782]]
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** '''3''' reactions found over '''8''' reactions in the full pathway
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* [[PWY-5667]]
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* [[PWY-6891]], thiazole biosynthesis II (aerobic bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6891 PWY-6891]
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* [[PWY-5981]]
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** '''2''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-7417]]
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* [[PWY-6892]], thiazole biosynthesis I (facultative anaerobic bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6892 PWY-6892]
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* [[PWY0-1319]]
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** '''3''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-7587]]
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* [[PWY-7560]], methylerythritol phosphate pathway II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7560 PWY-7560]
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* [[PWY-6453]]
−
** '''9''' reactions found over '''9''' reactions in the full pathway
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−
== Reconstruction information  ==
+
−
* [[orthology]]:
+
−
** [[pantograph]]:
+
−
*** [[creinhardtii]]
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−
*** [[synechocystis]]
+
−
*** [[athaliana]]
+
−
*** [[esiliculosus]]
+
−
* [[manual]]:
+
−
** [[primary_network]]
+
−
* [[annotation]]:
+
−
** [[pathwaytools]]:
+
−
*** [[experimental_annotation]]
+
−
*** [[in-silico_annotation]]
+
 
== External links  ==
 
== External links  ==
−
* RHEA:
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{{#set: left end position=3790}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12605 12605]
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{{#set: transcription direction=NEGATIVE}}
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* LIGAND-RXN:
+
{{#set: right end position=5494}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R05636 R05636]
+
{{#set: centisome position=45.24833    }}
−
{{#set: direction=LEFT-TO-RIGHT}}
+
{{#set: reaction associated=1-ACYLGLYCEROL-3-P-ACYLTRANSFER-RXN|RXN-15043|RXN-16025|RXN-16032|RXN-16066|RXN-16067|RXN-16076|RXN-16077|RXN-16118|RXN-1623|RXN-17008|RXN-17009|RXN-17010|RXN-17011|RXN-17012|RXN-17013|RXN-17014|RXN-17015|RXN-17019|RXN-17020|RXN-17021|RXN-17022|RXN-17023|RXN-17024|RXN-17729|RXN0-5514|RXN0-6705}}
−
{{#set: common name=1-deoxy-d-xylulose_5-phosphate_chloroplast}}
+
{{#set: pathway associated=TRIGLSYN-PWY|PWY-7411|PWY-7589|PWY-7782|PWY-5667|PWY-5981|PWY-7417|PWY0-1319|PWY-7587|PWY-6453}}
−
{{#set: ec number=EC-2.2.1.7}}
+
−
{{#set: gene associated=Tiso_gene_17311}}
+
−
{{#set: in pathway=NONMEVIPP-PWY|PYRIDOXSYN-PWY|PWY-6891|PWY-6892|PWY-7560}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=creinhardtii|synechocystis|athaliana|esiliculosus}}
+
−
{{#set: reconstruction category=manual}}
+
−
{{#set: reconstruction source=primary_network}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
+

Revision as of 18:53, 18 March 2018

Gene Tiso_gene_13959

  • left end position:
    • 3790
  • transcription direction:
    • NEGATIVE
  • right end position:
    • 5494
  • centisome position:
    • 45.24833
  • Synonym(s):

Reactions associated

  • 1-ACYLGLYCEROL-3-P-ACYLTRANSFER-RXN
  • RXN-15043
  • RXN-16025
    • in-silico_annotation
      • ec-number
    • experimental_annotation
      • ec-number
  • RXN-16032
    • in-silico_annotation
      • ec-number
    • experimental_annotation
      • ec-number
  • RXN-16066
    • in-silico_annotation
      • ec-number
    • experimental_annotation
      • ec-number
  • RXN-16067
    • in-silico_annotation
      • ec-number
    • experimental_annotation
      • ec-number
  • RXN-16076
    • in-silico_annotation
      • ec-number
    • experimental_annotation
      • ec-number
  • RXN-16077
    • in-silico_annotation
      • ec-number
    • experimental_annotation
      • ec-number
  • RXN-16118
    • in-silico_annotation
      • ec-number
    • experimental_annotation
      • ec-number
  • RXN-1623
  • RXN-17008
    • in-silico_annotation
      • ec-number
    • experimental_annotation
      • ec-number
  • RXN-17009
    • in-silico_annotation
      • ec-number
    • experimental_annotation
      • ec-number
  • RXN-17010
    • in-silico_annotation
      • ec-number
    • experimental_annotation
      • ec-number
  • RXN-17011
    • in-silico_annotation
      • ec-number
    • experimental_annotation
      • ec-number
  • RXN-17012
    • in-silico_annotation
      • ec-number
    • experimental_annotation
      • ec-number
  • RXN-17013
    • in-silico_annotation
      • ec-number
    • experimental_annotation
      • ec-number
  • RXN-17014
    • in-silico_annotation
      • ec-number
    • experimental_annotation
      • ec-number
  • RXN-17015
    • in-silico_annotation
      • ec-number
    • experimental_annotation
      • ec-number
  • RXN-17019
    • in-silico_annotation
      • ec-number
    • experimental_annotation
      • ec-number
  • RXN-17020
    • in-silico_annotation
      • ec-number
    • experimental_annotation
      • ec-number
  • RXN-17021
    • in-silico_annotation
      • ec-number
    • experimental_annotation
      • ec-number
  • RXN-17022
    • in-silico_annotation
      • ec-number
    • experimental_annotation
      • ec-number
  • RXN-17023
    • in-silico_annotation
      • ec-number
    • experimental_annotation
      • ec-number
  • RXN-17024
    • in-silico_annotation
      • ec-number
    • experimental_annotation
      • ec-number
  • RXN-17729
    • in-silico_annotation
      • ec-number
    • experimental_annotation
      • ec-number
  • RXN0-5514
  • RXN0-6705

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=2-KETO-3-METHYL-VALERATE&oldid=27570"