Difference between revisions of "HOMO-I-CIT"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PGLYCDEHYDROG-RXN PGLYCDEHYDROG-RXN] == * direction: ** REVERSIBLE * common name: ** d-3-phosphogly...")
(Created page with "Category:Gene == Gene Tiso_gene_19413 == * left end position: ** 867 * transcription direction: ** POSITIVE * right end position: ** 2300 * centisome position: ** 37.06712...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PGLYCDEHYDROG-RXN PGLYCDEHYDROG-RXN] ==
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== Gene Tiso_gene_19413 ==
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* direction:
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* left end position:
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** REVERSIBLE
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** 867
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* common name:
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* transcription direction:
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** d-3-phosphoglycerate_dehydrogenase
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** POSITIVE
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** ORF
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* right end position:
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* ec number:
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** 2300
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** [http://enzyme.expasy.org/EC/1.1.1.95 EC-1.1.1.95]
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* centisome position:
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** 37.06712   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* [[CARBODEHYDRAT-RXN]]
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** 1 [[G3P]][c] '''+''' 1 [[NAD]][c] '''<=>''' 1 [[3-P-HYDROXYPYRUVATE]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c]
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** in-silico_annotation
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* With common name(s):
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***ec-number
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** 1 3-phospho-D-glycerate[c] '''+''' 1 NAD+[c] '''<=>''' 1 3-phospho-hydroxypyruvate[c] '''+''' 1 NADH[c] '''+''' 1 H+[c]
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* [[RXN0-5224]]
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** in-silico_annotation
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== Genes associated with this reaction  ==
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***ec-number
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Genes have been associated with this reaction based on different elements listed below.
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== Pathways associated ==
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* [[Tiso_gene_6223]]
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* [[PWY-241]]
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** IN-SILICO_ANNOTATION
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* [[PWYQT-4429]]
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***EC-NUMBER
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* [[PWY-7117]]
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** EXPERIMENTAL_ANNOTATION
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* [[PWY-7115]]
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***EC-NUMBER
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* [[PWY-6142]]
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* [[Tiso_gene_15687]]
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* [[CYANCAT-PWY]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[synechocystis]]
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** [[pantograph]]-[[esiliculosus]]
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** [[pantograph]]-[[creinhardtii]]
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* [[Tiso_gene_17123]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_18904]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_15686]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_6224]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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== Pathways ==
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* [[SERSYN-PWY]], L-serine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=SERSYN-PWY SERSYN-PWY]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[creinhardtii]]
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*** [[synechocystis]]
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*** [[esiliculosus]]
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*** [[athaliana]]
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* [[manual]]:
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** [[primary_network]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: left end position=867}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12641 12641]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: right end position=2300}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01513 R01513]
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{{#set: centisome position=37.06712    }}
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* UNIPROT:
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{{#set: reaction associated=CARBODEHYDRAT-RXN|RXN0-5224}}
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** [http://www.uniprot.org/uniprot/Q58424 Q58424]
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{{#set: pathway associated=PWY-241|PWYQT-4429|PWY-7117|PWY-7115|PWY-6142|CYANCAT-PWY}}
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** [http://www.uniprot.org/uniprot/P43885 P43885]
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** [http://www.uniprot.org/uniprot/P35136 P35136]
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** [http://www.uniprot.org/uniprot/Q9PP40 Q9PP40]
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** [http://www.uniprot.org/uniprot/P0A9T0 P0A9T0]
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** [http://www.uniprot.org/uniprot/P40510 P40510]
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** [http://www.uniprot.org/uniprot/P40054 P40054]
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** [http://www.uniprot.org/uniprot/O49485 O49485]
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** [http://www.uniprot.org/uniprot/P87228 P87228]
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** [http://www.uniprot.org/uniprot/O04130 O04130]
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=d-3-phosphoglycerate_dehydrogenase}}
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{{#set: common name=ORF}}
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{{#set: ec number=EC-1.1.1.95}}
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{{#set: gene associated=Tiso_gene_6223|Tiso_gene_15687|Tiso_gene_17123|Tiso_gene_18904|Tiso_gene_15686|Tiso_gene_6224}}
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{{#set: in pathway=SERSYN-PWY}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=creinhardtii|synechocystis|esiliculosus|athaliana}}
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{{#set: reconstruction category=manual}}
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{{#set: reconstruction source=primary_network}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Revision as of 01:02, 19 March 2018

Gene Tiso_gene_19413

  • left end position:
    • 867
  • transcription direction:
    • POSITIVE
  • right end position:
    • 2300
  • centisome position:
    • 37.06712
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=HOMO-I-CIT&oldid=28453"