Difference between revisions of "Tiso gene 19047"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Gene == Gene Tiso_gene_13653 == * left end position: ** 3646 * transcription direction: ** POSITIVE * right end position: ** 6139 * centisome position: ** 34.3573...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12625 RXN-12625] == * direction: ** LEFT-TO-RIGHT * common name: ** N,N'-diacetylchitobiose &be...")
Line 1: Line 1:
−
[[Category:Gene]]
+
[[Category:Reaction]]
−
== Gene Tiso_gene_13653 ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12625 RXN-12625] ==
−
* left end position:
+
* direction:
−
** 3646
+
** LEFT-TO-RIGHT
−
* transcription direction:
+
* common name:
−
** POSITIVE
+
** N,N'-diacetylchitobiose β-N-acetylglucosaminidase
−
* right end position:
+
** beta-hexosaminidase
−
** 6139
+
* ec number:
−
* centisome position:
+
** [http://enzyme.expasy.org/EC/3.2.1.52 EC-3.2.1.52]
−
** 34.35733   
+
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reactions associated ==
+
== Reaction Formula ==
−
* [[ATPASE-RXN]]
+
* With identifiers:
−
** experimental_annotation
+
** 1 [[CHITOBIOSE]][c] '''+''' 1 [[WATER]][c] '''=>''' 2 [[N-acetyl-D-glucosamine]][c]
−
***automated-name-match
+
* With common name(s):
−
* [[NUCLEOSIDE-DIPHOSPHATASE-RXN]]
+
** 1 N,N'-diacetylchitobiose[c] '''+''' 1 H2O[c] '''=>''' 2 N-acetyl-D-glucosamine[c]
−
** experimental_annotation
+
 
−
***automated-name-match
+
== Genes associated with this reaction  ==
−
* [[NUCLEOSIDE-TRIPHOSPHATASE-RXN]]
+
Genes have been associated with this reaction based on different elements listed below.
−
** experimental_annotation
+
* [[Tiso_gene_1129]]
−
***automated-name-match
+
** IN-SILICO_ANNOTATION
−
* [[RXN-12195]]
+
***EC-NUMBER
−
** experimental_annotation
+
** [[pantograph]]-[[athaliana]]
−
***automated-name-match
+
* [[Tiso_gene_14122]]
−
* [[RXN-12196]]
+
** IN-SILICO_ANNOTATION
−
** experimental_annotation
+
***EC-NUMBER
−
***automated-name-match
+
** [[pantograph]]-[[athaliana]]
−
* [[RXN-14024]]
+
== Pathways  ==
−
** experimental_annotation
+
* [[PWY-7822]], chitin degradation III (Serratia): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7822 PWY-7822]
−
***automated-name-match
+
** '''2''' reactions found over '''7''' reactions in the full pathway
−
* [[RXN0-5462]]
+
* [[PWY-6902]], chitin degradation II (Vibrio): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6902 PWY-6902]
−
** experimental_annotation
+
** '''3''' reactions found over '''5''' reactions in the full pathway
−
***automated-name-match
+
== Reconstruction information  ==
−
== Pathways associated ==
+
* Category: [[orthology]]
−
* [[PWY-7184]]
+
** Source: [[orthology-athaliana]]
−
* [[PWY-7198]]
+
*** Tool: [[pantograph]]
−
* [[PWY-6545]]
+
* Category: [[annotation]]
−
* [[PWY-7210]]
+
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
{{#set: left end position=3646}}
+
* RHEA:
−
{{#set: transcription direction=POSITIVE}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30674 30674]
−
{{#set: right end position=6139}}
+
* LIGAND-RXN:
−
{{#set: centisome position=34.35733    }}
+
** [http://www.genome.jp/dbget-bin/www_bget?R00022 R00022]
−
{{#set: reaction associated=ATPASE-RXN|NUCLEOSIDE-DIPHOSPHATASE-RXN|NUCLEOSIDE-TRIPHOSPHATASE-RXN|RXN-12195|RXN-12196|RXN-14024|RXN0-5462}}
+
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: pathway associated=PWY-7184|PWY-7198|PWY-6545|PWY-7210}}
+
{{#set: common name=N,N'-diacetylchitobiose β-N-acetylglucosaminidase}}
 +
{{#set: common name=beta-hexosaminidase}}
 +
{{#set: ec number=EC-3.2.1.52}}
 +
{{#set: gene associated=Tiso_gene_1129|Tiso_gene_14122}}
 +
{{#set: in pathway=PWY-7822|PWY-6902}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=orthology-athaliana|annotation-in-silico_annotation}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 01:05, 19 March 2018

Reaction RXN-12625

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • N,N'-diacetylchitobiose β-N-acetylglucosaminidase
    • beta-hexosaminidase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7822, chitin degradation III (Serratia): PWY-7822
    • 2 reactions found over 7 reactions in the full pathway
  • PWY-6902, chitin degradation II (Vibrio): PWY-6902
    • 3 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_19047&oldid=28682"