Difference between revisions of "PABASYN-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8975 RXN-8975] == * direction: ** REVERSIBLE * common name: ** ORF * ec number: ** [http://enzy...")
(Created page with "Category:Gene == Gene Tiso_gene_3410 == * left end position: ** 91 * transcription direction: ** POSITIVE * right end position: ** 1568 * centisome position: ** 0.5439656...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8975 RXN-8975] ==
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== Gene Tiso_gene_3410 ==
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* direction:
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* left end position:
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** REVERSIBLE
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** 91
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* common name:
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* transcription direction:
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** ORF
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** POSITIVE
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* ec number:
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* right end position:
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** [http://enzyme.expasy.org/EC/2.7.8.13 EC-2.7.8.13]
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** 1568
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* centisome position:
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** 0.5439656   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* [[3.1.26.4-RXN]]
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** 1 [[C3]][c] '''+''' 1 [[CPD-9646]][c] '''<=>''' 1 [[C4]][c] '''+''' 1 [[UMP]][c]
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** in-silico_annotation
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* With common name(s):
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***ec-number
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** 1 UDP-N-acetyl-&alpha;-D-muramoyl-L-alanyl-&gamma;-D-glutamyl-L-lysyl-D-alanyl-D-alanine[c] '''+''' 1 di-trans,octa-cis-undecaprenyl phosphate[c] '''<=>''' 1 undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-&gamma;-D-glutamyl-L-lysyl- D-alanyl-D-alanine[c] '''+''' 1 UMP[c]
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== Pathways associated ==
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_1604]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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== Pathways ==
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* [[PWY-6471]], peptidoglycan biosynthesis IV (Enterococcus faecium): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6471 PWY-6471]
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** '''3''' reactions found over '''10''' reactions in the full pathway
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* [[PWY-5265]], peptidoglycan biosynthesis II (staphylococci): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5265 PWY-5265]
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** '''3''' reactions found over '''10''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[esiliculosus]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: left end position=91}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21920 21920]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: right end position=1568}}
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** [http://www.genome.jp/dbget-bin/www_bget?R05629 R05629]
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{{#set: centisome position=0.5439656    }}
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{{#set: direction=REVERSIBLE}}
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{{#set: reaction associated=3.1.26.4-RXN}}
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{{#set: common name=ORF}}
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{{#set: ec number=EC-2.7.8.13}}
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{{#set: gene associated=Tiso_gene_1604}}
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{{#set: in pathway=PWY-6471|PWY-5265}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=esiliculosus}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=in-silico_annotation}}
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Revision as of 00:07, 19 March 2018

Gene Tiso_gene_3410

  • left end position:
    • 91
  • transcription direction:
    • POSITIVE
  • right end position:
    • 1568
  • centisome position:
    • 0.5439656
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PABASYN-RXN&oldid=28810"