Difference between revisions of "UDP-GLUCURONATE"

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(Created page with "Category:Gene == Gene Tiso_gene_6376 == * left end position: ** 2643 * transcription direction: ** POSITIVE * right end position: ** 7383 * centisome position: ** 21.55791...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12196 RXN-12196] == * direction: ** LEFT-TO-RIGHT * common name: ** uridine_kinase ** ORF ** at...")
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[[Category:Gene]]
+
[[Category:Reaction]]
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== Gene Tiso_gene_6376 ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12196 RXN-12196] ==
−
* left end position:
+
* direction:
−
** 2643
+
** LEFT-TO-RIGHT
−
* transcription direction:
+
* common name:
−
** POSITIVE
+
** uridine_kinase
−
* right end position:
+
** ORF
−
** 7383
+
** atp-dependent_metalloprotease
−
* centisome position:
+
** member_of_the_hsp104_clp_superfamily
−
** 21.557913   
+
** helicase_mov-10-_-like
 +
** replication_factor_c_subunit_5
 +
** replication_factor_c_subunit_2
 +
** at1g33290
 +
** atpase_family_aaa_domain-containing_protein_2b-_partial
 +
** replication_factor_c_subunit_3
 +
** replication_control_protein_1_like
 +
** aaa_family_cdc48_subfamily
 +
** adenylate_guanylate
 +
** nfx1-type_zinc_finger-containing_protein_1
 +
** dna-binding_protein_smubp-2
 +
** e3_ubiquitin-protein_ligase_rnf213-like
 +
** atp-dependent_zinc_metalloprotease
 +
** cytosolic_fe-s_cluster_assembly_factor_nubp1_homolog
 +
** uncharacterized_transmembrane_protein_ddb_g0290641
 +
** isoform_m_of_dna_helicase_mcm9
 +
** 26s_proteaseregulatorysubunit6bhomolog
 +
** replication_factor_c_subunit_1
 +
** trna-splicing_endonuclease_positive_effector
 +
** adenylate_kinase_domain-containing_protein_1
 +
** gtpase_der
 +
** origin_recognition_complex_subunit_4
 +
** fidgetin-like_protein1
 +
** hsp104
 +
** atpase_aaa
 +
** katanin_p60_atpase-containing_subunit_a-like_2
 +
** sh2_domain_containing_protein
 +
** atpase_family_associated_with_various_cellular_activities
 +
** atpase_afg2_protein
 +
** atp-dependent_proteaseatpasesubunit
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/3.6.1.15 EC-3.6.1.15]
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reactions associated ==
+
== Reaction Formula ==
−
* [[2.1.1.77-RXN]]
+
* With identifiers:
−
** in-silico_annotation
+
** 1 [[UTP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Pi]][c] '''+''' 1 [[UDP]][c] '''+''' 1 [[PROTON]][c]
−
***ec-number
+
* With common name(s):
−
== Pathways associated ==
+
** 1 UTP[c] '''+''' 1 H2O[c] '''=>''' 1 phosphate[c] '''+''' 1 UDP[c] '''+''' 1 H+[c]
 +
 
 +
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* [[Tiso_gene_14227]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_1611]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_17616]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_9004]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** EXPERIMENTAL_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_1984]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_1959]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_546]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_38]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_13681]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_7123]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** EXPERIMENTAL_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_1541]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_14816]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_8763]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_11012]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_537]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_8601]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_8584]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_2929]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_623]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_15465]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_9243]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_14239]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_4194]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_2631]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_12899]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** EXPERIMENTAL_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_9659]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_12148]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_13264]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_8859]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_8949]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_1960]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_199]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_2448]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_15043]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_6614]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_4092]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_10221]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_16478]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_8164]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_538]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_1444]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** EXPERIMENTAL_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_4155]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_12149]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_19098]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_17751]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_7745]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_4026]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_1291]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_6180]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_2447]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_2889]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_2068]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** EXPERIMENTAL_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_5529]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_8461]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_20353]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_829]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_11098]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_4330]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_8950]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_4437]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_19350]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_9234]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_9423]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_4192]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_4436]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_9926]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_3653]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_2176]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_13268]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_14226]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_2452]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_6181]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_2897]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_5525]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_2449]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_2924]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_572]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_1610]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_195]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_13738]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_873]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_10282]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** EXPERIMENTAL_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_4726]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_9959]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_17449]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_9114]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_8860]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_14474]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_20327]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_13653]]
 +
** EXPERIMENTAL_ANNOTATION
 +
***AUTOMATED-NAME-MATCH
 +
* [[Tiso_gene_250]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_7734]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_3287]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_674]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_14646]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_2450]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_2451]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_7387]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_5166]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_4596]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_13325]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
== Pathways ==
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
{{#set: left end position=2643}}
+
* LIGAND-RXN:
−
{{#set: transcription direction=POSITIVE}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R00159 R00159]
−
{{#set: right end position=7383}}
+
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: centisome position=21.557913    }}
+
{{#set: common name=uridine_kinase}}
−
{{#set: reaction associated=2.1.1.77-RXN}}
+
{{#set: common name=ORF}}
 +
{{#set: common name=atp-dependent_metalloprotease}}
 +
{{#set: common name=member_of_the_hsp104_clp_superfamily}}
 +
{{#set: common name=helicase_mov-10-_-like}}
 +
{{#set: common name=replication_factor_c_subunit_5}}
 +
{{#set: common name=replication_factor_c_subunit_2}}
 +
{{#set: common name=at1g33290}}
 +
{{#set: common name=atpase_family_aaa_domain-containing_protein_2b-_partial}}
 +
{{#set: common name=replication_factor_c_subunit_3}}
 +
{{#set: common name=replication_control_protein_1_like}}
 +
{{#set: common name=aaa_family_cdc48_subfamily}}
 +
{{#set: common name=adenylate_guanylate}}
 +
{{#set: common name=nfx1-type_zinc_finger-containing_protein_1}}
 +
{{#set: common name=dna-binding_protein_smubp-2}}
 +
{{#set: common name=e3_ubiquitin-protein_ligase_rnf213-like}}
 +
{{#set: common name=atp-dependent_zinc_metalloprotease}}
 +
{{#set: common name=cytosolic_fe-s_cluster_assembly_factor_nubp1_homolog}}
 +
{{#set: common name=uncharacterized_transmembrane_protein_ddb_g0290641}}
 +
{{#set: common name=isoform_m_of_dna_helicase_mcm9}}
 +
{{#set: common name=26s_proteaseregulatorysubunit6bhomolog}}
 +
{{#set: common name=replication_factor_c_subunit_1}}
 +
{{#set: common name=trna-splicing_endonuclease_positive_effector}}
 +
{{#set: common name=adenylate_kinase_domain-containing_protein_1}}
 +
{{#set: common name=gtpase_der}}
 +
{{#set: common name=origin_recognition_complex_subunit_4}}
 +
{{#set: common name=fidgetin-like_protein1}}
 +
{{#set: common name=hsp104}}
 +
{{#set: common name=atpase_aaa}}
 +
{{#set: common name=katanin_p60_atpase-containing_subunit_a-like_2}}
 +
{{#set: common name=sh2_domain_containing_protein}}
 +
{{#set: common name=atpase_family_associated_with_various_cellular_activities}}
 +
{{#set: common name=atpase_afg2_protein}}
 +
{{#set: common name=atp-dependent_proteaseatpasesubunit}}
 +
{{#set: ec number=EC-3.6.1.15}}
 +
{{#set: gene associated=Tiso_gene_14227|Tiso_gene_1611|Tiso_gene_17616|Tiso_gene_9004|Tiso_gene_1984|Tiso_gene_1959|Tiso_gene_546|Tiso_gene_38|Tiso_gene_13681|Tiso_gene_7123|Tiso_gene_1541|Tiso_gene_14816|Tiso_gene_8763|Tiso_gene_11012|Tiso_gene_537|Tiso_gene_8601|Tiso_gene_8584|Tiso_gene_2929|Tiso_gene_623|Tiso_gene_15465|Tiso_gene_9243|Tiso_gene_14239|Tiso_gene_4194|Tiso_gene_2631|Tiso_gene_12899|Tiso_gene_9659|Tiso_gene_12148|Tiso_gene_13264|Tiso_gene_8859|Tiso_gene_8949|Tiso_gene_1960|Tiso_gene_199|Tiso_gene_2448|Tiso_gene_15043|Tiso_gene_6614|Tiso_gene_4092|Tiso_gene_10221|Tiso_gene_16478|Tiso_gene_8164|Tiso_gene_538|Tiso_gene_1444|Tiso_gene_4155|Tiso_gene_12149|Tiso_gene_19098|Tiso_gene_17751|Tiso_gene_7745|Tiso_gene_4026|Tiso_gene_1291|Tiso_gene_6180|Tiso_gene_2447|Tiso_gene_2889|Tiso_gene_2068|Tiso_gene_5529|Tiso_gene_8461|Tiso_gene_20353|Tiso_gene_829|Tiso_gene_11098|Tiso_gene_4330|Tiso_gene_8950|Tiso_gene_4437|Tiso_gene_19350|Tiso_gene_9234|Tiso_gene_9423|Tiso_gene_4192|Tiso_gene_4436|Tiso_gene_9926|Tiso_gene_3653|Tiso_gene_2176|Tiso_gene_13268|Tiso_gene_14226|Tiso_gene_2452|Tiso_gene_6181|Tiso_gene_2897|Tiso_gene_5525|Tiso_gene_2449|Tiso_gene_2924|Tiso_gene_572|Tiso_gene_1610|Tiso_gene_195|Tiso_gene_13738|Tiso_gene_873|Tiso_gene_10282|Tiso_gene_4726|Tiso_gene_9959|Tiso_gene_17449|Tiso_gene_9114|Tiso_gene_8860|Tiso_gene_14474|Tiso_gene_20327|Tiso_gene_13653|Tiso_gene_250|Tiso_gene_7734|Tiso_gene_3287|Tiso_gene_674|Tiso_gene_14646|Tiso_gene_2450|Tiso_gene_2451|Tiso_gene_7387|Tiso_gene_5166|Tiso_gene_4596|Tiso_gene_13325}}
 +
{{#set: in pathway=}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 00:07, 19 March 2018

Reaction RXN-12196

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • uridine_kinase
    • ORF
    • atp-dependent_metalloprotease
    • member_of_the_hsp104_clp_superfamily
    • helicase_mov-10-_-like
    • replication_factor_c_subunit_5
    • replication_factor_c_subunit_2
    • at1g33290
    • atpase_family_aaa_domain-containing_protein_2b-_partial
    • replication_factor_c_subunit_3
    • replication_control_protein_1_like
    • aaa_family_cdc48_subfamily
    • adenylate_guanylate
    • nfx1-type_zinc_finger-containing_protein_1
    • dna-binding_protein_smubp-2
    • e3_ubiquitin-protein_ligase_rnf213-like
    • atp-dependent_zinc_metalloprotease
    • cytosolic_fe-s_cluster_assembly_factor_nubp1_homolog
    • uncharacterized_transmembrane_protein_ddb_g0290641
    • isoform_m_of_dna_helicase_mcm9
    • 26s_proteaseregulatorysubunit6bhomolog
    • replication_factor_c_subunit_1
    • trna-splicing_endonuclease_positive_effector
    • adenylate_kinase_domain-containing_protein_1
    • gtpase_der
    • origin_recognition_complex_subunit_4
    • fidgetin-like_protein1
    • hsp104
    • atpase_aaa
    • katanin_p60_atpase-containing_subunit_a-like_2
    • sh2_domain_containing_protein
    • atpase_family_associated_with_various_cellular_activities
    • atpase_afg2_protein
    • atp-dependent_proteaseatpasesubunit
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 UTP[c] + 1 H2O[c] => 1 phosphate[c] + 1 UDP[c] + 1 H+[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





















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