Difference between revisions of "DXPREDISOM-RXN"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=PHOSPHORIBOSYL-AMP PHOSPHORIBOSYL-AMP] == * smiles: ** C(C4(C(C(C(N3(C(C2(=C(N(C1(C(C(C(O1)COP(...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=MALONYL-COA-ACP-TRANSACYL-RXN MALONYL-COA-ACP-TRANSACYL-RXN] == * direction: ** LEFT-TO-RIGHT * com...")
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=PHOSPHORIBOSYL-AMP PHOSPHORIBOSYL-AMP] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=MALONYL-COA-ACP-TRANSACYL-RXN MALONYL-COA-ACP-TRANSACYL-RXN] ==
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* smiles:
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* direction:
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** C(C4(C(C(C(N3(C(C2(=C(N(C1(C(C(C(O1)COP([O-])(=O)[O-])O)O))C=N2)N=C3))=N))O4)O)O))OP([O-])([O-])=O
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** LEFT-TO-RIGHT
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* inchi key:
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** InChIKey=RTQMRTSPTLIIHM-KEOHHSTQSA-J
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* common name:
 
* common name:
−
** 1-(5-phospho-β-D-ribosyl)-AMP
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** polyketide_synthase
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* molecular weight:
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** malonyl-_:acp_transacylase
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** 555.288   
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* ec number:
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** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
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** [http://enzyme.expasy.org/EC/2.3.1.85 EC-2.3.1.85]
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** [http://enzyme.expasy.org/EC/2.3.1.39 EC-2.3.1.39]
 
* Synonym(s):
 
* Synonym(s):
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** 1-(5-phosphoribosyl)-AMP
 
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** phosphoribosyl-AMP
 
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** 5-phosphoribosyl-AMP
 
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** N-(5-phospho-D-ribosyl)-AMP
 
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** N-(5'-phospho-D-ribosyl)-AMP
 
−
** N1-(5-phospho-D-ribosyl)-AMP
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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* [[HISTCYCLOHYD-RXN]]
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* With identifiers:
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* [[PRACH]]
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** 1 [[MALONYL-COA]][c] '''+''' 1 [[ACP]][c] '''=>''' 1 [[CO-A]][c] '''+''' 1 [[MALONYL-ACP]][c]
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== Reaction(s) known to produce the compound ==
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* With common name(s):
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* [[HISTPRATPHYD-RXN]]
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** 1 malonyl-CoA[c] '''+''' 1 a holo-[acyl-carrier protein][c] '''=>''' 1 coenzyme A[c] '''+''' 1 a malonyl-[acp][c]
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* [[PRADP]]
+
 
−
== Reaction(s) of unknown directionality ==
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== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* [[Tiso_gene_500]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
 +
* [[Tiso_gene_10876]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_136]]
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** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_19309]]
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** [[pantograph]]-[[synechocystis]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_135]]
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** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_18460]]
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** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** EXPERIMENTAL_ANNOTATION
 +
***EC-NUMBER
 +
** [[pantograph]]-[[synechocystis]]
 +
* [[Tiso_gene_13394]]
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** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
== Pathways  ==
 +
* [[PWY-6799]], fatty acid biosynthesis (plant mitochondria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6799 PWY-6799]
 +
** '''1''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-4381]], fatty acid biosynthesis initiation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-4381 PWY-4381]
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-7388]], octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7388 PWY-7388]
 +
** '''9''' reactions found over '''9''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-synechocystis]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
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* Category: [[manual]]
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** Source: [[manual-primary_network]]
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* Category: [[annotation]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* LIGAND-CPD:
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* LIGAND-RXN:
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** [http://www.genome.jp/dbget-bin/www_bget?C02741 C02741]
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** [http://www.genome.jp/dbget-bin/www_bget?R01626 R01626]
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* CHEBI:
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* UNIPROT:
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=59457 59457]
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** [http://www.uniprot.org/uniprot/P72391 P72391]
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* BIGG : prbamp
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** [http://www.uniprot.org/uniprot/P49327 P49327]
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* PUBCHEM:
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** [http://www.uniprot.org/uniprot/O34825 O34825]
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=45480652 45480652]
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** [http://www.uniprot.org/uniprot/Q9RT24 Q9RT24]
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* HMDB : HMDB12276
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** [http://www.uniprot.org/uniprot/Q9JW58 Q9JW58]
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{{#set: smiles=C(C4(C(C(C(N3(C(C2(=C(N(C1(C(C(C(O1)COP([O-])(=O)[O-])O)O))C=N2)N=C3))=N))O4)O)O))OP([O-])([O-])=O}}
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** [http://www.uniprot.org/uniprot/P0AAI9 P0AAI9]
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{{#set: inchi key=InChIKey=RTQMRTSPTLIIHM-KEOHHSTQSA-J}}
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** [http://www.uniprot.org/uniprot/O24916 O24916]
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{{#set: common name=1-(5-phospho-β-D-ribosyl)-AMP}}
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** [http://www.uniprot.org/uniprot/Q9JXR4 Q9JXR4]
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{{#set: molecular weight=555.288    }}
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** [http://www.uniprot.org/uniprot/Q9ZCJ6 Q9ZCJ6]
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{{#set: common name=1-(5-phosphoribosyl)-AMP|phosphoribosyl-AMP|5-phosphoribosyl-AMP|N-(5-phospho-D-ribosyl)-AMP|N-(5'-phospho-D-ribosyl)-AMP|N1-(5-phospho-D-ribosyl)-AMP}}
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** [http://www.uniprot.org/uniprot/Q9YBK5 Q9YBK5]
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{{#set: consumed by=HISTCYCLOHYD-RXN|PRACH}}
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** [http://www.uniprot.org/uniprot/Q9PJ11 Q9PJ11]
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{{#set: produced by=HISTPRATPHYD-RXN|PRADP}}
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** [http://www.uniprot.org/uniprot/P43712 P43712]
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** [http://www.uniprot.org/uniprot/Q9Z8P1 Q9Z8P1]
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** [http://www.uniprot.org/uniprot/O67041 O67041]
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** [http://www.uniprot.org/uniprot/Q9ZMY1 Q9ZMY1]
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** [http://www.uniprot.org/uniprot/Q9PKF6 Q9PKF6]
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** [http://www.uniprot.org/uniprot/P63458 P63458]
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** [http://www.uniprot.org/uniprot/O84241 O84241]
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** [http://www.uniprot.org/uniprot/Q9WZQ5 Q9WZQ5]
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** [http://www.uniprot.org/uniprot/P71019 P71019]
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** [http://www.uniprot.org/uniprot/P07149 P07149]
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** [http://www.uniprot.org/uniprot/P73242 P73242]
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** [http://www.uniprot.org/uniprot/Q8RU07 Q8RU07]
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** [http://www.uniprot.org/uniprot/Q54205 Q54205]
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** [http://www.uniprot.org/uniprot/O54437 O54437]
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** [http://www.uniprot.org/uniprot/Q56692 Q56692]
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** [http://www.uniprot.org/uniprot/O13698 O13698]
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** [http://www.uniprot.org/uniprot/Q9RA34 Q9RA34]
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** [http://www.uniprot.org/uniprot/O69476 O69476]
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** [http://www.uniprot.org/uniprot/P12276 P12276]
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** [http://www.uniprot.org/uniprot/P12785 P12785]
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{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=polyketide_synthase}}
 +
{{#set: common name=malonyl-_:acp_transacylase}}
 +
{{#set: ec number=EC-2.3.1.86}}
 +
{{#set: ec number=EC-2.3.1.85}}
 +
{{#set: ec number=EC-2.3.1.39}}
 +
{{#set: gene associated=Tiso_gene_500|Tiso_gene_10876|Tiso_gene_136|Tiso_gene_19309|Tiso_gene_135|Tiso_gene_18460|Tiso_gene_13394}}
 +
{{#set: in pathway=PWY-6799|PWY-4381|PWY-7388}}
 +
{{#set: reconstruction category=orthology|manual|annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|manual-primary_network|annotation-in-silico_annotation|orthology-synechocystis|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 00:09, 19 March 2018

Reaction MALONYL-COA-ACP-TRANSACYL-RXN

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 malonyl-CoA[c] + 1 a holo-[acyl-carrier protein][c] => 1 coenzyme A[c] + 1 a malonyl-[acp][c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6799, fatty acid biosynthesis (plant mitochondria): PWY-6799
    • 1 reactions found over 4 reactions in the full pathway
  • PWY-4381, fatty acid biosynthesis initiation I: PWY-4381
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-7388, octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast): PWY-7388
    • 9 reactions found over 9 reactions in the full pathway

Reconstruction information

External links






Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=DXPREDISOM-RXN&oldid=28967"