Difference between revisions of "ATIDm"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13615 RXN-13615] == * direction: ** LEFT-TO-RIGHT * common name: ** acyl-coenzyme_a_oxidase **...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9530 RXN-9530] == * direction: ** LEFT-TO-RIGHT * common name: ** trans-Δ2-decenoyl-[acp]...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13615 RXN-13615] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9530 RXN-9530] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** acyl-coenzyme_a_oxidase
+
** trans-Δ2-decenoyl-[acp]reductase (NADPH, B-specific)
−
** ORF
+
** polyketide_synthase
−
** acyl-CoA_dehydrogenase
+
−
** acyl-_dehydrogenase
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.3.8.7 EC-1.3.8.7]
+
** [http://enzyme.expasy.org/EC/1.3.1.10 EC-1.3.1.10]
 +
** [http://enzyme.expasy.org/EC/1.3.1.39 EC-1.3.1.39]
 +
** [http://enzyme.expasy.org/EC/2.3.1.85 EC-2.3.1.85]
 +
** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[CPD-10267]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[ETF-Oxidized]][c] '''=>''' 1 [[T2-DECENOYL-COA]][c] '''+''' 1 [[ETF-Reduced]][c]
+
** 1 [[PROTON]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[Trans-D2-decenoyl-ACPs]][c] '''=>''' 1 [[Decanoyl-ACPs]][c] '''+''' 1 [[NADP]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 decanoyl-CoA[c] '''+''' 1 H+[c] '''+''' 1 an oxidized electron-transfer flavoprotein[c] '''=>''' 1 trans-dec-2-enoyl-CoA[c] '''+''' 1 a reduced electron-transfer flavoprotein[c]
+
** 1 H+[c] '''+''' 1 NADPH[c] '''+''' 1 a (2E)-dec-2-enoyl-[acp][c] '''=>''' 1 a decanoyl-[acp][c] '''+''' 1 NADP+[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_17967]]
+
* [[Tiso_gene_135]]
 
** IN-SILICO_ANNOTATION
 
** IN-SILICO_ANNOTATION
 
***EC-NUMBER
 
***EC-NUMBER
−
* [[Tiso_gene_883]]
+
* [[Tiso_gene_10876]]
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_5991]]
+
 
** IN-SILICO_ANNOTATION
 
** IN-SILICO_ANNOTATION
 
***EC-NUMBER
 
***EC-NUMBER
−
* [[Tiso_gene_18566]]
+
* [[Tiso_gene_13394]]
 
** IN-SILICO_ANNOTATION
 
** IN-SILICO_ANNOTATION
 
***EC-NUMBER
 
***EC-NUMBER
−
* [[Tiso_gene_6475]]
+
* [[Tiso_gene_136]]
 
** IN-SILICO_ANNOTATION
 
** IN-SILICO_ANNOTATION
 
***EC-NUMBER
 
***EC-NUMBER
−
* [[Tiso_gene_16631]]
+
* [[Tiso_gene_500]]
 
** IN-SILICO_ANNOTATION
 
** IN-SILICO_ANNOTATION
 
***EC-NUMBER
 
***EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-7094]], fatty acid salvage: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7094 PWY-7094]
+
* [[PWY-5994]], palmitate biosynthesis I (animals and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5994 PWY-5994]
−
** '''5''' reactions found over '''6''' reactions in the full pathway
+
** '''31''' reactions found over '''31''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[annotation]]:
+
* Category: [[manual]]
−
** [[pathwaytools]]:
+
** Source: [[manual-primary_network]]
−
*** [[experimental_annotation]]
+
* Category: [[annotation]]
−
*** [[in-silico_annotation]]
+
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=28355 28355]
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=acyl-coenzyme_a_oxidase}}
+
{{#set: common name=trans-Δ2-decenoyl-[acp]reductase (NADPH, B-specific)}}
−
{{#set: common name=ORF}}
+
{{#set: common name=polyketide_synthase}}
−
{{#set: common name=acyl-CoA_dehydrogenase}}
+
{{#set: ec number=EC-1.3.1.10}}
−
{{#set: common name=acyl-_dehydrogenase}}
+
{{#set: ec number=EC-1.3.1.39}}
−
{{#set: ec number=EC-1.3.8.7}}
+
{{#set: ec number=EC-2.3.1.85}}
−
{{#set: gene associated=Tiso_gene_17967|Tiso_gene_883|Tiso_gene_5991|Tiso_gene_18566|Tiso_gene_6475|Tiso_gene_16631}}
+
{{#set: ec number=EC-2.3.1.86}}
−
{{#set: in pathway=PWY-7094}}
+
{{#set: gene associated=Tiso_gene_135|Tiso_gene_10876|Tiso_gene_13394|Tiso_gene_136|Tiso_gene_500}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: in pathway=PWY-5994}}
 +
{{#set: reconstruction category=manual|annotation}}
 +
{{#set: reconstruction source=manual-primary_network|annotation-in-silico_annotation}}
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
 

Revision as of 00:11, 19 March 2018

Reaction RXN-9530

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5994, palmitate biosynthesis I (animals and fungi): PWY-5994
    • 31 reactions found over 31 reactions in the full pathway

Reconstruction information

External links

"trans-Δ2-decenoyl-[acp]reductase (NADPH, B-specific)" cannot be used as a page name in this wiki.






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