Difference between revisions of "Tiso gene 1942"

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(Created page with "Category:Gene == Gene Tiso_gene_6884 == * left end position: ** 7378 * transcription direction: ** POSITIVE * right end position: ** 9260 * centisome position: ** 62.93074...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8975 RXN-8975] == * direction: ** REVERSIBLE * common name: ** ORF * ec number: ** [http://enzy...")
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[[Category:Gene]]
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[[Category:Reaction]]
== Gene Tiso_gene_6884 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8975 RXN-8975] ==
* left end position:
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* direction:
** 7378
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** REVERSIBLE
* transcription direction:
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* common name:
** POSITIVE
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** ORF
* right end position:
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* ec number:
** 9260
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** [http://enzyme.expasy.org/EC/2.7.8.13 EC-2.7.8.13]
* centisome position:
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** 62.93074   
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* Synonym(s):
 
* Synonym(s):
  
== Reactions associated ==
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== Reaction Formula ==
* [[3-HYDROXYDECANOYL-ACP-DEHYDR-RXN]]
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* With identifiers:
** experimental_annotation
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** 1 [[CPD-9646]][c] '''+''' 1 [[C3]][c] '''<=>''' 1 [[C4]][c] '''+''' 1 [[UMP]][c]
***automated-name-match
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* With common name(s):
* [[4.2.1.58-RXN]]
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** 1 di-trans,octa-cis-undecaprenyl phosphate[c] '''+''' 1 UDP-N-acetyl-&alpha;-D-muramoyl-L-alanyl-&gamma;-D-glutamyl-L-lysyl-D-alanyl-D-alanine[c] '''<=>''' 1 undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-&gamma;-D-glutamyl-L-lysyl- D-alanyl-D-alanine[c] '''+''' 1 UMP[c]
** experimental_annotation
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***automated-name-match
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== Genes associated with this reaction  ==
* [[4.2.1.59-RXN]]
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Genes have been associated with this reaction based on different elements listed below.
** experimental_annotation
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* [[Tiso_gene_1604]]
***automated-name-match
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** IN-SILICO_ANNOTATION
* [[4.2.1.61-RXN]]
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***EC-NUMBER
** experimental_annotation
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** [[pantograph]]-[[esiliculosus]]
***automated-name-match
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== Pathways ==
* [[RXN-10061]]
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* [[PWY-6471]], peptidoglycan biosynthesis IV (Enterococcus faecium): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6471 PWY-6471]
** experimental_annotation
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** '''3''' reactions found over '''10''' reactions in the full pathway
***automated-name-match
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* [[PWY-5265]], peptidoglycan biosynthesis II (staphylococci): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5265 PWY-5265]
* [[RXN-10656]]
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** '''3''' reactions found over '''10''' reactions in the full pathway
** experimental_annotation
+
== Reconstruction information  ==
***automated-name-match
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* Category: [[orthology]]
* [[RXN-10660]]
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** Source: [[orthology-esiliculosus]]
** experimental_annotation
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*** Tool: [[pantograph]]
***automated-name-match
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* Category: [[annotation]]
* [[RXN-11477]]
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** Source: [[annotation-in-silico_annotation]]
** experimental_annotation
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*** Tool: [[pathwaytools]]
***automated-name-match
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* [[RXN-11481]]
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** experimental_annotation
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***automated-name-match
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* [[RXN-16619]]
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** experimental_annotation
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***automated-name-match
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* [[RXN-16623]]
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** experimental_annotation
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***automated-name-match
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* [[RXN-16627]]
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** experimental_annotation
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***automated-name-match
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* [[RXN-16631]]
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** experimental_annotation
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***automated-name-match
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* [[RXN-9520]]
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** experimental_annotation
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***automated-name-match
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* [[RXN-9533]]
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** experimental_annotation
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***automated-name-match
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* [[RXN-9537]]
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** experimental_annotation
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***automated-name-match
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* [[RXN-9557]]
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** experimental_annotation
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***automated-name-match
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* [[RXN-9634]]
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** experimental_annotation
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***automated-name-match
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* [[RXN-9655]]
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** experimental_annotation
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***automated-name-match
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* [[RXN0-2144]]
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** experimental_annotation
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***automated-name-match
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* [[RXN1G-1084]]
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** experimental_annotation
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***automated-name-match
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* [[RXN1G-220]]
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** experimental_annotation
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***automated-name-match
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* [[RXN1G-320]]
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** experimental_annotation
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***automated-name-match
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* [[RXN1G-363]]
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** experimental_annotation
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***automated-name-match
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* [[RXN1G-517]]
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** experimental_annotation
+
***automated-name-match
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== Pathways associated ==
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* [[PWY-6113]]
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* [[FASYN-ELONG-PWY]]
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* [[PWY-6519]]
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* [[PWY-7388]]
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* [[PWY-7664]]
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* [[PWY-6282]]
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* [[PWY-5973]]
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* [[PWY-5989]]
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* [[PWY-5971]]
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* [[PWYG-321]]
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* [[PWY-7663]]
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* [[PWY-5994]]
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* [[PWY3O-355]]
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* [[PWY0-862]]
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== External links  ==
 
== External links  ==
{{#set: left end position=7378}}
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* RHEA:
{{#set: transcription direction=POSITIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21920 21920]
{{#set: right end position=9260}}
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* LIGAND-RXN:
{{#set: centisome position=62.93074    }}
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** [http://www.genome.jp/dbget-bin/www_bget?R05629 R05629]
{{#set: reaction associated=3-HYDROXYDECANOYL-ACP-DEHYDR-RXN|4.2.1.58-RXN|4.2.1.59-RXN|4.2.1.61-RXN|RXN-10061|RXN-10656|RXN-10660|RXN-11477|RXN-11481|RXN-16619|RXN-16623|RXN-16627|RXN-16631|RXN-9520|RXN-9533|RXN-9537|RXN-9557|RXN-9634|RXN-9655|RXN0-2144|RXN1G-1084|RXN1G-220|RXN1G-320|RXN1G-363|RXN1G-517}}
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{{#set: direction=REVERSIBLE}}
{{#set: pathway associated=PWY-6113|FASYN-ELONG-PWY|PWY-6519|PWY-7388|PWY-7664|PWY-6282|PWY-5973|PWY-5989|PWY-5971|PWYG-321|PWY-7663|PWY-5994|PWY3O-355|PWY0-862}}
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{{#set: common name=ORF}}
 +
{{#set: ec number=EC-2.7.8.13}}
 +
{{#set: gene associated=Tiso_gene_1604}}
 +
{{#set: in pathway=PWY-6471|PWY-5265}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 01:12, 19 March 2018

Reaction RXN-8975

  • direction:
    • REVERSIBLE
  • common name:
    • ORF
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 di-trans,octa-cis-undecaprenyl phosphate[c] + 1 UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine[c] <=> 1 undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine[c] + 1 UMP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6471, peptidoglycan biosynthesis IV (Enterococcus faecium): PWY-6471
    • 3 reactions found over 10 reactions in the full pathway
  • PWY-5265, peptidoglycan biosynthesis II (staphylococci): PWY-5265
    • 3 reactions found over 10 reactions in the full pathway

Reconstruction information

External links