Difference between revisions of "ATDCDm"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-884 RXN0-884] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF * ec number: ** [http://e...")
(Created page with "Category:Gene == Gene Tiso_gene_5365 == * left end position: ** 90 * transcription direction: ** NEGATIVE * right end position: ** 3112 * centisome position: ** 0.6637657...")
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Gene]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-884 RXN0-884] ==
+
== Gene Tiso_gene_5365 ==
−
* direction:
+
* left end position:
−
** LEFT-TO-RIGHT
+
** 90
−
* common name:
+
* transcription direction:
−
** ORF
+
** NEGATIVE
−
* ec number:
+
* right end position:
−
** [http://enzyme.expasy.org/EC/1.17.7.4 EC-1.17.7.4]
+
** 3112
 +
* centisome position:
 +
** 0.6637657   
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction Formula ==
+
== Reactions associated ==
−
* With identifiers:
+
* [[GLUTAMATE-N-ACETYLTRANSFERASE-RXN]]
−
** 2 [[Reduced-ferredoxins]][c] '''+''' 2 [[PROTON]][c] '''+''' 1 [[HYDROXY-METHYL-BUTENYL-DIP]][c] '''=>''' 1 [[WATER]][c] '''+''' 1 [[CPD-4211]][c] '''+''' 2 [[Oxidized-ferredoxins]][c]
+
** in-silico_annotation
−
* With common name(s):
+
***automated-name-match
−
** 2 a reduced ferredoxin [iron-sulfur] cluster[c] '''+''' 2 H+[c] '''+''' 1 (E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate[c] '''=>''' 1 H2O[c] '''+''' 1 dimethylallyl diphosphate[c] '''+''' 2 an oxidized ferredoxin [iron-sulfur] cluster[c]
+
* [[N-ACETYLTRANSFER-RXN]]
−
 
+
** in-silico_annotation
−
== Genes associated with this reaction  ==
+
***automated-name-match
−
Genes have been associated with this reaction based on different elements listed below.
+
* [[RXN0-6948]]
−
* [[Tiso_gene_5609]]
+
** in-silico_annotation
−
** IN-SILICO_ANNOTATION
+
***automated-name-match
−
***EC-NUMBER
+
== Pathways associated ==
−
** EXPERIMENTAL_ANNOTATION
+
* [[PWY-5154]]
−
***EC-NUMBER
+
* [[GLUTORN-PWY]]
−
** [[pantograph]]-[[esiliculosus]]
+
* [[ARGSYNBSUB-PWY]]
−
== Pathways  ==
+
−
* [[NONMEVIPP-PWY]], methylerythritol phosphate pathway I: [http://metacyc.org/META/NEW-IMAGE?object=NONMEVIPP-PWY NONMEVIPP-PWY]
+
−
** '''9''' reactions found over '''9''' reactions in the full pathway
+
−
* [[PWY-7560]], methylerythritol phosphate pathway II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7560 PWY-7560]
+
−
** '''9''' reactions found over '''9''' reactions in the full pathway
+
−
== Reconstruction information  ==
+
−
* [[orthology]]:
+
−
** [[pantograph]]:
+
−
*** [[esiliculosus]]
+
−
* [[annotation]]:
+
−
** [[pathwaytools]]:
+
−
*** [[experimental_annotation]]
+
−
*** [[in-silico_annotation]]
+
 
== External links  ==
 
== External links  ==
−
* LIGAND-RXN:
+
{{#set: left end position=90}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R08210 R08210]
+
{{#set: transcription direction=NEGATIVE}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R07219 R07219]
+
{{#set: right end position=3112}}
−
{{#set: direction=LEFT-TO-RIGHT}}
+
{{#set: centisome position=0.6637657    }}
−
{{#set: common name=ORF}}
+
{{#set: reaction associated=GLUTAMATE-N-ACETYLTRANSFERASE-RXN|N-ACETYLTRANSFER-RXN|RXN0-6948}}
−
{{#set: ec number=EC-1.17.7.4}}
+
{{#set: pathway associated=PWY-5154|GLUTORN-PWY|ARGSYNBSUB-PWY}}
−
{{#set: gene associated=Tiso_gene_5609}}
+
−
{{#set: in pathway=NONMEVIPP-PWY|PWY-7560}}
+
−
{{#set: reconstruction category=orthology}}
+
−
{{#set: reconstruction tool=pantograph}}
+
−
{{#set: reconstruction source=esiliculosus}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
+

Revision as of 00:12, 19 March 2018

Gene Tiso_gene_5365

  • left end position:
    • 90
  • transcription direction:
    • NEGATIVE
  • right end position:
    • 3112
  • centisome position:
    • 0.6637657
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=ATDCDm&oldid=29207"