Difference between revisions of "Tiso gene 18208"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN1G-445 RXN1G-445] == * direction: ** LEFT-TO-RIGHT * common name: ** 3-oxoacyl-synthase * ec num...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.7.7.8-RXN 2.7.7.8-RXN] == * direction: ** REVERSIBLE * common name: ** polynucleotide_phosphoryla...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN1G-445 RXN1G-445] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.7.7.8-RXN 2.7.7.8-RXN] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
−
** 3-oxoacyl-synthase
+
** polynucleotide_phosphorylase_polyadenylase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.3.1.41 EC-2.3.1.41]
+
** [http://enzyme.expasy.org/EC/2.7.7.8 EC-2.7.7.8]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[MALONYL-COA]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Arachidoyl-ACPs]][c] '''=>''' 1 [[3-oxo-behenoyl-ACPs]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
+
** 1 [[Pi]][c] '''+''' 1 [[ssRNAs]][c] '''<=>''' 1 [[Nucleoside-Diphosphates]][c] '''+''' 1 [[ssRNAs]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 malonyl-CoA[c] '''+''' 1 H+[c] '''+''' 1 an arachidoyl-[acp][c] '''=>''' 1 a 3-oxo-behenoyl-[acp][c] '''+''' 1 coenzyme A[c] '''+''' 1 CO2[c]
+
** 1 phosphate[c] '''+''' 1 a single-stranded RNA[c] '''<=>''' 1 a nucleoside diphosphate[c] '''+''' 1 a single-stranded RNA[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_14485]]
+
* [[Tiso_gene_2987]]
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_15991]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_5939]]
+
 
** IN-SILICO_ANNOTATION
 
** IN-SILICO_ANNOTATION
−
***EC-NUMBER
+
***AUTOMATED-NAME-MATCH
 
** EXPERIMENTAL_ANNOTATION
 
** EXPERIMENTAL_ANNOTATION
−
***EC-NUMBER
+
***AUTOMATED-NAME-MATCH
−
* [[Tiso_gene_19302]]
+
 
** [[pantograph]]-[[esiliculosus]]
 
** [[pantograph]]-[[esiliculosus]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWYG-321]], mycolate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWYG-321 PWYG-321]
 
−
** '''86''' reactions found over '''182''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-esiliculosus]]
−
*** [[esiliculosus]]
+
*** Tool: [[pantograph]]
−
* [[annotation]]:
+
* Category: [[annotation]]
−
** [[pathwaytools]]:
+
** Source: [[annotation-experimental_annotation]]
−
*** [[experimental_annotation]]
+
*** Tool: [[pathwaytools]]
−
*** [[in-silico_annotation]]
+
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
{{#set: direction=LEFT-TO-RIGHT}}
+
* LIGAND-RXN:
−
{{#set: common name=3-oxoacyl-synthase}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R07282 R07282]
−
{{#set: ec number=EC-2.3.1.41}}
+
* UNIPROT:
−
{{#set: gene associated=Tiso_gene_14485|Tiso_gene_15991|Tiso_gene_5939|Tiso_gene_19302}}
+
** [http://www.uniprot.org/uniprot/P44584 P44584]
−
{{#set: in pathway=PWYG-321}}
+
** [http://www.uniprot.org/uniprot/Q9PN44 Q9PN44]
−
{{#set: reconstruction category=orthology}}
+
** [http://www.uniprot.org/uniprot/P05055 P05055]
−
{{#set: reconstruction tool=pantograph}}
+
** [http://www.uniprot.org/uniprot/Q9JV72 Q9JV72]
−
{{#set: reconstruction source=esiliculosus}}
+
** [http://www.uniprot.org/uniprot/P41121 P41121]
−
{{#set: reconstruction category=annotation}}
+
** [http://www.uniprot.org/uniprot/P50849 P50849]
−
{{#set: reconstruction tool=pathwaytools}}
+
** [http://www.uniprot.org/uniprot/P72659 P72659]
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
+
** [http://www.uniprot.org/uniprot/O24288 O24288]
 +
** [http://www.uniprot.org/uniprot/Q8CJQ6 Q8CJQ6]
 +
** [http://www.uniprot.org/uniprot/O32966 O32966]
 +
{{#set: direction=REVERSIBLE}}
 +
{{#set: common name=polynucleotide_phosphorylase_polyadenylase}}
 +
{{#set: ec number=EC-2.7.7.8}}
 +
{{#set: gene associated=Tiso_gene_2987}}
 +
{{#set: in pathway=}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 00:15, 19 March 2018

Reaction 2.7.7.8-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • polynucleotide_phosphorylase_polyadenylase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 phosphate[c] + 1 a single-stranded RNA[c] <=> 1 a nucleoside diphosphate[c] + 1 a single-stranded RNA[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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