Difference between revisions of "Tiso gene 12142"
From metabolic_network
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14228 RXN-14228] == * direction: ** REVERSIBLE * common name: ** ORF ** adenylate_kinase_domain...") |
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ADPREDUCT-RXN ADPREDUCT-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ADP reductase ** ri...") |
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[[Category:Reaction]] | [[Category:Reaction]] | ||
− | == Reaction [http://metacyc.org/META/NEW-IMAGE?object= | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ADPREDUCT-RXN ADPREDUCT-RXN] == |
* direction: | * direction: | ||
− | ** | + | ** LEFT-TO-RIGHT |
* common name: | * common name: | ||
− | ** | + | ** ADP reductase |
− | ** | + | ** ribonucleoside-diphosphate_reductase |
− | + | ||
* ec number: | * ec number: | ||
− | ** [http://enzyme.expasy.org/EC/ | + | ** [http://enzyme.expasy.org/EC/1.17.4.1 EC-1.17.4.1] |
* Synonym(s): | * Synonym(s): | ||
== Reaction Formula == | == Reaction Formula == | ||
* With identifiers: | * With identifiers: | ||
− | ** 1 [[ | + | ** 1 [[ADP]][c] '''+''' 1 [[Red-Thioredoxin]][c] '''=>''' 1 [[WATER]][c] '''+''' 1 [[DADP]][c] '''+''' 1 [[Ox-Thioredoxin]][c] |
* With common name(s): | * With common name(s): | ||
− | ** 1 | + | ** 1 ADP[c] '''+''' 1 a reduced thioredoxin[c] '''=>''' 1 H2O[c] '''+''' 1 dADP[c] '''+''' 1 an oxidized thioredoxin[c] |
== Genes associated with this reaction == | == Genes associated with this reaction == | ||
Genes have been associated with this reaction based on different elements listed below. | Genes have been associated with this reaction based on different elements listed below. | ||
− | * [[ | + | * [[Tiso_gene_10617]] |
− | + | ||
− | + | ||
− | + | ||
− | + | ||
− | + | ||
− | + | ||
− | + | ||
− | + | ||
** EXPERIMENTAL_ANNOTATION | ** EXPERIMENTAL_ANNOTATION | ||
***EC-NUMBER | ***EC-NUMBER | ||
** [[pantograph]]-[[athaliana]] | ** [[pantograph]]-[[athaliana]] | ||
+ | ** [[pantograph]]-[[synechocystis]] | ||
** [[pantograph]]-[[esiliculosus]] | ** [[pantograph]]-[[esiliculosus]] | ||
− | * [[ | + | * [[Tiso_gene_10138]] |
+ | ** [[pantograph]]-[[athaliana]] | ||
+ | ** [[pantograph]]-[[synechocystis]] | ||
+ | ** [[pantograph]]-[[esiliculosus]] | ||
+ | * [[Tiso_gene_9916]] | ||
** IN-SILICO_ANNOTATION | ** IN-SILICO_ANNOTATION | ||
***EC-NUMBER | ***EC-NUMBER | ||
− | * [[ | + | ** [[pantograph]]-[[athaliana]] |
− | ** | + | ** [[pantograph]]-[[synechocystis]] |
− | ** | + | ** [[pantograph]]-[[esiliculosus]] |
− | * [[ | + | * [[Tiso_gene_9915]] |
− | ** | + | ** EXPERIMENTAL_ANNOTATION |
***EC-NUMBER | ***EC-NUMBER | ||
== Pathways == | == Pathways == | ||
+ | * [[PWY-7220]], adenosine deoxyribonucleotides de novo biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7220 PWY-7220] | ||
+ | ** '''3''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[PWY-7227]], adenosine deoxyribonucleotides de novo biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7227 PWY-7227] | ||
+ | ** '''2''' reactions found over '''2''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
− | * [[orthology]]: | + | * Category: [[orthology]] |
− | ** [[pantograph]]: | + | ** Source: [[orthology-athaliana]] |
− | *** [[ | + | *** Tool: [[pantograph]] |
− | ** | + | ** Source: [[orthology-synechocystis]] |
− | * [[ | + | *** Tool: [[pantograph]] |
− | ** [[ | + | ** Source: [[orthology-esiliculosus]] |
− | ** | + | *** Tool: [[pantograph]] |
− | *** [[in-silico_annotation]] | + | * Category: [[manual]] |
+ | ** Source: [[manual-primary_network]] | ||
+ | * Category: [[annotation]] | ||
+ | ** Source: [[annotation-experimental_annotation]] | ||
+ | *** Tool: [[pathwaytools]] | ||
+ | ** Source: [[annotation-in-silico_annotation]] | ||
+ | *** Tool: [[pathwaytools]] | ||
== External links == | == External links == | ||
* RHEA: | * RHEA: | ||
− | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=28034 28034] |
* LIGAND-RXN: | * LIGAND-RXN: | ||
− | ** [http://www.genome.jp/dbget-bin/www_bget? | + | ** [http://www.genome.jp/dbget-bin/www_bget?R02017 R02017] |
− | {{#set: direction= | + | {{#set: direction=LEFT-TO-RIGHT}} |
− | {{#set: common name= | + | {{#set: common name=ADP reductase}} |
− | {{#set: common name= | + | {{#set: common name=ribonucleoside-diphosphate_reductase}} |
− | + | {{#set: ec number=EC-1.17.4.1}} | |
− | {{#set: ec number=EC- | + | {{#set: gene associated=Tiso_gene_10617|Tiso_gene_10138|Tiso_gene_9916|Tiso_gene_9915}} |
− | {{#set: gene associated= | + | {{#set: in pathway=PWY-7220|PWY-7227}} |
− | {{#set: in pathway=}} | + | {{#set: reconstruction category=orthology|manual|annotation}} |
− | {{#set: reconstruction category=orthology | + | {{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network}} |
− | + | {{#set: reconstruction tool=pantograph|pathwaytools}} | |
− | {{#set: reconstruction source= | + | |
− | + | ||
− | {{#set: reconstruction tool=pathwaytools | + | |
− | + |
Revision as of 00:16, 19 March 2018
Contents
Reaction ADPREDUCT-RXN
- direction:
- LEFT-TO-RIGHT
- common name:
- ADP reductase
- ribonucleoside-diphosphate_reductase
- ec number:
- Synonym(s):
Reaction Formula
- With identifiers:
- 1 ADP[c] + 1 Red-Thioredoxin[c] => 1 WATER[c] + 1 DADP[c] + 1 Ox-Thioredoxin[c]
- With common name(s):
- 1 ADP[c] + 1 a reduced thioredoxin[c] => 1 H2O[c] + 1 dADP[c] + 1 an oxidized thioredoxin[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Tiso_gene_10617
- EXPERIMENTAL_ANNOTATION
- EC-NUMBER
- pantograph-athaliana
- pantograph-synechocystis
- pantograph-esiliculosus
- EXPERIMENTAL_ANNOTATION
- Tiso_gene_10138
- Tiso_gene_9916
- IN-SILICO_ANNOTATION
- EC-NUMBER
- pantograph-athaliana
- pantograph-synechocystis
- pantograph-esiliculosus
- IN-SILICO_ANNOTATION
- Tiso_gene_9915
- EXPERIMENTAL_ANNOTATION
- EC-NUMBER
- EXPERIMENTAL_ANNOTATION
Pathways
- PWY-7220, adenosine deoxyribonucleotides de novo biosynthesis II: PWY-7220
- 3 reactions found over 4 reactions in the full pathway
- PWY-7227, adenosine deoxyribonucleotides de novo biosynthesis: PWY-7227
- 2 reactions found over 2 reactions in the full pathway
Reconstruction information
- Category: orthology
- Source: orthology-athaliana
- Tool: pantograph
- Source: orthology-synechocystis
- Tool: pantograph
- Source: orthology-esiliculosus
- Tool: pantograph
- Source: orthology-athaliana
- Category: manual
- Source: manual-primary_network
- Category: annotation
- Source: annotation-experimental_annotation
- Tool: pathwaytools
- Source: annotation-in-silico_annotation
- Tool: pathwaytools
- Source: annotation-experimental_annotation
External links