Difference between revisions of "TRANS-RXN-118"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=R96 R96] == * direction: ** LEFT-TO-RIGHT * common name: ** R96 * Synonym(s): == Reaction Formula...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=UDPKIN-RXN UDPKIN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF ** nucleoside_diphosp...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=R96 R96] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=UDPKIN-RXN UDPKIN-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** R96
+
** ORF
 +
** nucleoside_diphosphate_kinase
 +
** adenylate_kinase_domain-containing_protein_1
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/2.7.4.6 EC-2.7.4.6]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[NEUROSPORENE]][c] '''+''' 1.0 [[NADPH]][c] '''+''' 1.0 [[PROTON]][c] '''+''' 1.0 [[OXYGEN-MOLECULE]][c] '''=>''' 1.0 [[CPD1F-114]][c] '''+''' 2.0 [[WATER]][c] '''+''' 1.0 [[NADP]][c]
+
** 1 [[ATP]][c] '''+''' 1 [[UDP]][c] '''=>''' 1 [[UTP]][c] '''+''' 1 [[ADP]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 all-trans neurosporene[c] '''+''' 1.0 NADPH[c] '''+''' 1.0 H+[c] '''+''' 1.0 oxygen[c] '''=>''' 1.0 all-trans-lycopene[c] '''+''' 2.0 H2O[c] '''+''' 1.0 NADP+[c]
+
** 1 ATP[c] '''+''' 1 UDP[c] '''=>''' 1 UTP[c] '''+''' 1 ADP[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_7142]]
+
* [[Tiso_gene_17272]]
−
** [[pantograph]]-[[synechocystis]]
+
** IN-SILICO_ANNOTATION
−
* [[Tiso_gene_916]]
+
***EC-NUMBER
−
** [[pantograph]]-[[synechocystis]]
+
* [[Tiso_gene_9290]]
−
* [[Tiso_gene_917]]
+
** IN-SILICO_ANNOTATION
−
** [[pantograph]]-[[synechocystis]]
+
***EC-NUMBER
−
* [[Tiso_gene_15802]]
+
* [[Tiso_gene_195]]
−
** [[pantograph]]-[[synechocystis]]
+
** IN-SILICO_ANNOTATION
−
* [[Tiso_gene_13369]]
+
***EC-NUMBER
−
** [[pantograph]]-[[synechocystis]]
+
* [[Tiso_gene_16529]]
−
* [[Tiso_gene_16794]]
+
** IN-SILICO_ANNOTATION
−
** [[pantograph]]-[[synechocystis]]
+
***EC-NUMBER
−
* [[Tiso_gene_3092]]
+
** EXPERIMENTAL_ANNOTATION
−
** [[pantograph]]-[[synechocystis]]
+
***EC-NUMBER
−
* [[Tiso_gene_16795]]
+
** [[pantograph]]-[[athaliana]]
 
** [[pantograph]]-[[synechocystis]]
 
** [[pantograph]]-[[synechocystis]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_17271]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_18224]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY-7176]], UTP and CTP de novo biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7176 PWY-7176]
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[orthology]]:
+
* Category: [[orthology]]
−
** [[pantograph]]:
+
** Source: [[orthology-athaliana]]
−
*** [[synechocystis]]
+
*** Tool: [[pantograph]]
 +
** Source: [[orthology-synechocystis]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[manual]]
 +
** Source: [[manual-primary_network]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25098 25098]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R00156 R00156]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=R96}}
+
{{#set: common name=ORF}}
−
{{#set: gene associated=Tiso_gene_7142|Tiso_gene_916|Tiso_gene_917|Tiso_gene_15802|Tiso_gene_13369|Tiso_gene_16794|Tiso_gene_3092|Tiso_gene_16795}}
+
{{#set: common name=nucleoside_diphosphate_kinase}}
−
{{#set: in pathway=}}
+
{{#set: common name=adenylate_kinase_domain-containing_protein_1}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: ec number=EC-2.7.4.6}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: gene associated=Tiso_gene_17272|Tiso_gene_9290|Tiso_gene_195|Tiso_gene_16529|Tiso_gene_17271|Tiso_gene_18224}}
−
{{#set: reconstruction source=synechocystis}}
+
{{#set: in pathway=PWY-7176}}
 +
{{#set: reconstruction category=orthology|manual|annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 00:18, 19 March 2018

Reaction UDPKIN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • ORF
    • nucleoside_diphosphate_kinase
    • adenylate_kinase_domain-containing_protein_1
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 ATP[c] + 1 UDP[c] => 1 UTP[c] + 1 ADP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7176, UTP and CTP de novo biosynthesis: PWY-7176
    • 3 reactions found over 3 reactions in the full pathway

Reconstruction information

External links






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