Difference between revisions of "RXN0-5462"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17855 RXN-17855] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12570 RXN-12570] == * direction: ** LEFT-TO-RIGHT * common name: ** 3-hydroxyacyl-_dehydrogenas...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17855 RXN-17855] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12570 RXN-12570] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 +
* common name:
 +
** 3-hydroxyacyl-_dehydrogenase
 +
** hydroxyacyl-coenzyme_a_dehydrogenase_3-ketoacyl-coenzyme_a_thiolase_enoyl-coenzyme_a_hydratasealpha_subunit
 +
** hydroxyacyl-coenzyme_a_mitochondrial
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.3.1.bv EC-2.3.1.bv]
+
** [http://enzyme.expasy.org/EC/1.1.1.35 EC-1.1.1.35]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[ACETYL-COA]][c] '''+''' 1 [[L-methionyl-L-isoleucyl-Protein]][c] '''=>''' 1 [[CO-A]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[N-Ac-L-methionyl-L-isoleucyl-Protein]][c]
+
** 1 [[NADH]][c] '''+''' 1 [[K-HEXANOYL-COA]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[OH-HEXANOYL-COA]][c] '''+''' 1 [[NAD]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 acetyl-CoA[c] '''+''' 1 an N-terminal-L-methionyl-L-isoleucyl-[protein][c] '''=>''' 1 coenzyme A[c] '''+''' 1 H+[c] '''+''' 1 an N-terminal Nα-acetyl-L-methionyl-L-isoleucyl-[protein][c]
+
** 1 NADH[c] '''+''' 1 3-oxohexanoyl-CoA[c] '''+''' 1 H+[c] '''=>''' 1 (S)-3-hydroxyhexanoyl-CoA[c] '''+''' 1 NAD+[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* [[Tiso_gene_14026]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** EXPERIMENTAL_ANNOTATION
 +
***EC-NUMBER
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_14027]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
* [[Tiso_gene_5857]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** EXPERIMENTAL_ANNOTATION
 +
***EC-NUMBER
 +
** [[pantograph]]-[[athaliana]]
 +
** [[pantograph]]-[[esiliculosus]]
 +
** [[pantograph]]-[[creinhardtii]]
 +
** [[pantograph]]-[[creinhardtii]]
 +
* [[Tiso_gene_14262]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
** EXPERIMENTAL_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_18838]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 +
* [[Tiso_gene_18839]]
 +
** IN-SILICO_ANNOTATION
 +
***EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-7800]], Ac/N-end rule pathway: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7800 PWY-7800]
+
* [[PWY-6863]], pyruvate fermentation to hexanol (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6863 PWY-6863]
−
** '''21''' reactions found over '''21''' reactions in the full pathway
+
** '''5''' reactions found over '''11''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* [[annotation]]:
+
* Category: [[orthology]]
−
** [[pathwaytools]]:
+
** Source: [[orthology-athaliana]]
−
*** [[experimental_annotation]]
+
*** Tool: [[pantograph]]
−
*** [[in-silico_annotation]]
+
** Source: [[orthology-creinhardtii]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=31144 31144]
 +
* LIGAND-RXN:
 +
** [http://www.genome.jp/dbget-bin/www_bget?R04748 R04748]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: ec number=EC-2.3.1.bv}}
+
{{#set: common name=3-hydroxyacyl-_dehydrogenase}}
−
{{#set: in pathway=PWY-7800}}
+
{{#set: common name=hydroxyacyl-coenzyme_a_dehydrogenase_3-ketoacyl-coenzyme_a_thiolase_enoyl-coenzyme_a_hydratasealpha_subunit}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: common name=hydroxyacyl-coenzyme_a_mitochondrial}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: ec number=EC-1.1.1.35}}
−
{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
+
{{#set: gene associated=Tiso_gene_14026|Tiso_gene_14027|Tiso_gene_5857|Tiso_gene_14262|Tiso_gene_18838|Tiso_gene_18839}}
 +
{{#set: in pathway=PWY-6863}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|orthology-athaliana|annotation-in-silico_annotation|orthology-creinhardtii|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 01:18, 19 March 2018

Reaction RXN-12570

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • 3-hydroxyacyl-_dehydrogenase
    • hydroxyacyl-coenzyme_a_dehydrogenase_3-ketoacyl-coenzyme_a_thiolase_enoyl-coenzyme_a_hydratasealpha_subunit
    • hydroxyacyl-coenzyme_a_mitochondrial
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 NADH[c] + 1 3-oxohexanoyl-CoA[c] + 1 H+[c] => 1 (S)-3-hydroxyhexanoyl-CoA[c] + 1 NAD+[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6863, pyruvate fermentation to hexanol (engineered): PWY-6863
    • 5 reactions found over 11 reactions in the full pathway

Reconstruction information

External links






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