Difference between revisions of "Gap-filling-gapfilling solution with meneco draft medium"
From metabolic_network
(Created page with "== TISOGEM description == == Automatic reconstruction with [http://aureme.genouest.org AuReMe] == The automatic reconstruction of ''Tisocrysis_lutea'' results to a Genome scal...") |
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== TISOGEM description == | == TISOGEM description == | ||
== Automatic reconstruction with [http://aureme.genouest.org AuReMe] == | == Automatic reconstruction with [http://aureme.genouest.org AuReMe] == | ||
− | The automatic reconstruction of ''Tisocrysis_lutea'' results to a Genome scale Model containing 2796 reactions, 2745 metabolites, 2728 genes and 1212 pathways. This GeM was obtained based on the following sources: | + | The automatic reconstruction of ''Tisocrysis_lutea'' results to a Genome scale [[MEDIA:Tlutea_lvl3.xml|Model]] containing 2796 reactions, 2745 metabolites, 2728 genes and 1212 pathways. This GeM was obtained based on the following sources: |
* Based on annotation data: | * Based on annotation data: | ||
** Tool: [http://bioinformatics.ai.sri.com/ptools/ Pathway tools] | ** Tool: [http://bioinformatics.ai.sri.com/ptools/ Pathway tools] |
Revision as of 14:53, 11 January 2018
TISOGEM description
Automatic reconstruction with AuReMe
The automatic reconstruction of Tisocrysis_lutea results to a Genome scale Model containing 2796 reactions, 2745 metabolites, 2728 genes and 1212 pathways. This GeM was obtained based on the following sources:
- Based on annotation data:
- Tool: Pathway tools
- Creation of a metabolic network containing 2568 reactions
- Tool: Pathway tools
- Based on orthology data:
- Tool: Pantograph
- From template CREINHARDTII creation of a metabolic network containing: 558 reactions
- From template SYNECHOCYSTIS creation of a metabolic network containing: 260 reactions
- From template ATHALIANA creation of a metabolic network containing: 419 reactions
- From template ESILICULOSUS creation of a metabolic network containing: 1191 reactions
- Tool: Pantograph
- Based on expertise:
- 314 reaction(s) added
- Based on gap-filling:
- Tool: meneco
- 17 reaction(s) added
- Tool: meneco