Difference between revisions of "RXN-13608"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16649 RXN-16649] == * direction: ** LEFT-TO-RIGHT * common name: ** beta-lactamase * ec number:...")
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[[Category:Pathway]]
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[[Category:Reaction]]
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7187 PWY-7187] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16649 RXN-16649] ==
* taxonomic range:
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* direction:
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-2157]
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** LEFT-TO-RIGHT
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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* common name:
 
* common name:
** pyrimidine deoxyribonucleotides de novo biosynthesis II
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** beta-lactamase
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* ec number:
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** [http://enzyme.expasy.org/EC/3.4.16.4 EC-3.4.16.4]
 
* Synonym(s):
 
* Synonym(s):
  
== Reaction(s) found ==
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== Reaction Formula ==
'''4''' reactions found over '''7''' reactions in the full pathway
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* With identifiers:
* [[DTDPKIN-RXN]]
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** 1 [[CPD-17927]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CPD-17926]][c] '''+''' 1 [[D-ALANINE]][c]
* [[DTMPKI-RXN]]
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* With common name(s):
* [[DUTP-PYROP-RXN]]
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** 1 a nascent peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine) pentapeptide[c] '''+''' 1 H2O[c] '''=>''' 1 a nascent peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine) tetrapeptide[c] '''+''' 1 D-alanine[c]
* [[THYMIDYLATESYN-RXN]]
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== Reaction(s) not found ==
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== Genes associated with this reaction  ==
* [http://metacyc.org/META/NEW-IMAGE?object=DCTP-DEAM-RXN DCTP-DEAM-RXN]
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Genes have been associated with this reaction based on different elements listed below.
* [http://metacyc.org/META/NEW-IMAGE?object=RXN0-723 RXN0-723]
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* [[Tiso_gene_18870]]
* [http://metacyc.org/META/NEW-IMAGE?object=RXN0-724 RXN0-724]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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== Pathways  ==
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* [[PWY0-1586]], peptidoglycan maturation (meso-diaminopimelate containing): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1586 PWY0-1586]
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** '''2''' reactions found over '''12''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
* ECOCYC:
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{{#set: direction=LEFT-TO-RIGHT}}
** [http://metacyc.org/ECOLI/NEW-IMAGE?object=PWY-7187 PWY-7187]
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{{#set: common name=beta-lactamase}}
{{#set: taxonomic range=TAX-2157}}
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{{#set: ec number=EC-3.4.16.4}}
{{#set: taxonomic range=TAX-2}}
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{{#set: gene associated=Tiso_gene_18870}}
{{#set: common name=pyrimidine deoxyribonucleotides de novo biosynthesis II}}
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{{#set: in pathway=PWY0-1586}}
{{#set: reaction found=4}}
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{{#set: reconstruction category=annotation}}
{{#set: reaction not found=7}}
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{{#set: reconstruction source=annotation-in-silico_annotation}}
{{#set: completion rate=57.0}}
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{{#set: reconstruction tool=pathwaytools}}

Revision as of 18:19, 18 March 2018

Reaction RXN-16649

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • beta-lactamase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 a nascent peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine) pentapeptide[c] + 1 H2O[c] => 1 a nascent peptidoglycan with (L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine) tetrapeptide[c] + 1 D-alanine[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY0-1586, peptidoglycan maturation (meso-diaminopimelate containing): PWY0-1586
    • 2 reactions found over 12 reactions in the full pathway

Reconstruction information

External links