Difference between revisions of "CPD-19157"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PRPPAMIDOTRANS-RXN PRPPAMIDOTRANS-RXN] == * direction: ** REVERSIBLE * common name: ** ORF ** short...")
(Created page with "Category:Gene == Gene Tiso_gene_18204 == * right end position: ** 3120 * transcription direction: ** NEGATIVE * left end position: ** 387 * centisome position: ** 12.17747...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PRPPAMIDOTRANS-RXN PRPPAMIDOTRANS-RXN] ==
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== Gene Tiso_gene_18204 ==
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* direction:
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* right end position:
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** REVERSIBLE
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** 3120
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* common name:
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* transcription direction:
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** ORF
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** NEGATIVE
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** short-chain_dehydrogenase_reductase
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* left end position:
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* ec number:
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** 387
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** [http://enzyme.expasy.org/EC/2.4.2.14 EC-2.4.2.14]
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* centisome position:
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** 12.17747   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[RIBOKIN-RXN]]
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** 1 [[5-P-BETA-D-RIBOSYL-AMINE]][c] '''+''' 1 [[GLT]][c] '''+''' 1 [[PPI]][c] '''<=>''' 1 [[WATER]][c] '''+''' 1 [[PRPP]][c] '''+''' 1 [[GLN]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: automated-name-match
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** 1 5-phospho-&beta;-D-ribosylamine[c] '''+''' 1 L-glutamate[c] '''+''' 1 diphosphate[c] '''<=>''' 1 H2O[c] '''+''' 1 5-phospho-&alpha;-D-ribose 1-diphosphate[c] '''+''' 1 L-glutamine[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_1007]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_9914]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[synechocystis]]
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** [[pantograph]]-[[esiliculosus]]
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** [[pantograph]]-[[creinhardtii]]
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== Pathways  ==
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* [[PWY-6121]], 5-aminoimidazole ribonucleotide biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6121 PWY-6121]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-6122]], 5-aminoimidazole ribonucleotide biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6122 PWY-6122]
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** '''4''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-7282]], 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7282 PWY-7282]
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** '''6''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-6277]], superpathway of 5-aminoimidazole ribonucleotide biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6277 PWY-6277]
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** '''6''' reactions found over '''9''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-creinhardtii]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-synechocystis]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Reaction: [[RXN-14223]]
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* Category: [[manual]]
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** Source: [[manual-primary_network]]
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* Category: [[annotation]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: automated-name-match
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** Source: [[orthology-esiliculosus]]
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== Pathways associated ==
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* [[RIBOKIN-PWY]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=3120}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14905 14905]
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{{#set: transcription direction=NEGATIVE}}
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* LIGAND-RXN:
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{{#set: left end position=387}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01072 R01072]
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{{#set: centisome position=12.17747    }}
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* UNIPROT:
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{{#set: reaction associated=RIBOKIN-RXN|RXN-14223}}
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** [http://www.uniprot.org/uniprot/P28173 P28173]
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{{#set: pathway associated=RIBOKIN-PWY}}
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** [http://www.uniprot.org/uniprot/P35433 P35433]
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** [http://www.uniprot.org/uniprot/Q06203 Q06203]
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** [http://www.uniprot.org/uniprot/O29388 O29388]
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** [http://www.uniprot.org/uniprot/O67236 O67236]
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** [http://www.uniprot.org/uniprot/P65829 P65829]
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** [http://www.uniprot.org/uniprot/O57979 O57979]
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** [http://www.uniprot.org/uniprot/Q9X0X4 Q9X0X4]
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** [http://www.uniprot.org/uniprot/Q9RXT6 Q9RXT6]
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** [http://www.uniprot.org/uniprot/Q9K0C4 Q9K0C4]
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** [http://www.uniprot.org/uniprot/Q9V253 Q9V253]
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** [http://www.uniprot.org/uniprot/Q9PIT3 Q9PIT3]
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** [http://www.uniprot.org/uniprot/Q57657 Q57657]
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** [http://www.uniprot.org/uniprot/Q9JVC9 Q9JVC9]
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** [http://www.uniprot.org/uniprot/O26742 O26742]
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** [http://www.uniprot.org/uniprot/P43854 P43854]
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** [http://www.uniprot.org/uniprot/P35853 P35853]
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** [http://www.uniprot.org/uniprot/P41390 P41390]
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** [http://www.uniprot.org/uniprot/Q27601 Q27601]
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** [http://www.uniprot.org/uniprot/Q38999 Q38999]
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** [http://www.uniprot.org/uniprot/P04046 P04046]
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** [http://www.uniprot.org/uniprot/Q55621 Q55621]
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** [http://www.uniprot.org/uniprot/Q55038 Q55038]
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** [http://www.uniprot.org/uniprot/Q9STG9 Q9STG9]
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** [http://www.uniprot.org/uniprot/Q9T0J5 Q9T0J5]
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** [http://www.uniprot.org/uniprot/P52418 P52418]
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** [http://www.uniprot.org/uniprot/P52419 P52419]
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** [http://www.uniprot.org/uniprot/Q22134 Q22134]
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** [http://www.uniprot.org/uniprot/Q9ZB05 Q9ZB05]
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** [http://www.uniprot.org/uniprot/P00497 P00497]
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** [http://www.uniprot.org/uniprot/P0AG16 P0AG16]
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=ORF}}
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{{#set: common name=short-chain_dehydrogenase_reductase}}
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{{#set: ec number=EC-2.4.2.14}}
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{{#set: gene associated=Tiso_gene_1007|Tiso_gene_9914}}
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{{#set: in pathway=PWY-6121|PWY-6122|PWY-7282|PWY-6277}}
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{{#set: reconstruction category=orthology|manual|annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Revision as of 14:44, 21 March 2018

Gene Tiso_gene_18204

  • right end position:
    • 3120
  • transcription direction:
    • NEGATIVE
  • left end position:
    • 387
  • centisome position:
    • 12.17747
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=CPD-19157&oldid=29869"