Difference between revisions of "RXN-9527"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PHOSPHAGLYPSYN-RXN PHOSPHAGLYPSYN-RXN] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enz...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PRPPAMIDOTRANS-RXN PRPPAMIDOTRANS-RXN] == * direction: ** REVERSIBLE * common name: ** ORF ** short...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PHOSPHAGLYPSYN-RXN PHOSPHAGLYPSYN-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PRPPAMIDOTRANS-RXN PRPPAMIDOTRANS-RXN] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 +
* common name:
 +
** ORF
 +
** short-chain_dehydrogenase_reductase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.7.8.5 EC-2.7.8.5]
+
** [http://enzyme.expasy.org/EC/2.4.2.14 EC-2.4.2.14]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[GLYCEROL-3P]][c] '''+''' 1 [[CDPDIACYLGLYCEROL]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[CMP]][c] '''+''' 1 [[L-1-PHOSPHATIDYL-GLYCEROL-P]][c]
+
** 1 [[GLT]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[5-P-BETA-D-RIBOSYL-AMINE]][c] '''<=>''' 1 [[PRPP]][c] '''+''' 1 [[WATER]][c] '''+''' 1 [[GLN]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 sn-glycerol 3-phosphate[c] '''+''' 1 a CDP-diacylglycerol[c] '''=>''' 1 H+[c] '''+''' 1 CMP[c] '''+''' 1 1-(3-sn-phosphatidyl)-sn-glycerol 3-phosphate[c]
+
** 1 L-glutamate[c] '''+''' 1 diphosphate[c] '''+''' 1 5-phospho-&beta;-D-ribosylamine[c] '''<=>''' 1 5-phospho-&alpha;-D-ribose 1-diphosphate[c] '''+''' 1 H2O[c] '''+''' 1 L-glutamine[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[Tiso_gene_1007]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_9914]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-synechocystis]]
 +
** Source: [[orthology-esiliculosus]]
 +
** Source: [[orthology-creinhardtii]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY4FS-7]], phosphatidylglycerol biosynthesis I (plastidic): [http://metacyc.org/META/NEW-IMAGE?object=PWY4FS-7 PWY4FS-7]
+
* [[PWY-6121]], 5-aminoimidazole ribonucleotide biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6121 PWY-6121]
−
** '''3''' reactions found over '''4''' reactions in the full pathway
+
** '''5''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY4FS-8]], phosphatidylglycerol biosynthesis II (non-plastidic): [http://metacyc.org/META/NEW-IMAGE?object=PWY4FS-8 PWY4FS-8]
+
* [[PWY-6122]], 5-aminoimidazole ribonucleotide biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6122 PWY-6122]
−
** '''3''' reactions found over '''4''' reactions in the full pathway
+
** '''4''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-5269]], cardiolipin biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5269 PWY-5269]
+
* [[PWY-7282]], 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7282 PWY-7282]
−
** '''2''' reactions found over '''3''' reactions in the full pathway
+
** '''6''' reactions found over '''9''' reactions in the full pathway
−
* [[PWY-7817]], type I lipoteichoic acid biosynthesis (S. aureus): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7817 PWY-7817]
+
* [[PWY-6277]], superpathway of 5-aminoimidazole ribonucleotide biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6277 PWY-6277]
−
** '''7''' reactions found over '''16''' reactions in the full pathway
+
** '''6''' reactions found over '''9''' reactions in the full pathway
−
* [[PWY-5668]], cardiolipin biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5668 PWY-5668]
+
−
** '''2''' reactions found over '''3''' reactions in the full pathway
+
−
* [[PWY0-1545]], cardiolipin biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1545 PWY0-1545]
+
−
** '''2''' reactions found over '''3''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-athaliana]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-creinhardtii]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-synechocystis]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[manual]]
 +
** Source: [[manual-primary_network]]
 
* Category: [[annotation]]
 
* Category: [[annotation]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12593 12593]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14905 14905]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01801 R01801]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01072 R01072]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/Q9JTH1 Q9JTH1]
+
** [http://www.uniprot.org/uniprot/P28173 P28173]
−
** [http://www.uniprot.org/uniprot/P46322 P46322]
+
** [http://www.uniprot.org/uniprot/P35433 P35433]
−
** [http://www.uniprot.org/uniprot/P44528 P44528]
+
** [http://www.uniprot.org/uniprot/Q06203 Q06203]
−
** [http://www.uniprot.org/uniprot/P47360 P47360]
+
** [http://www.uniprot.org/uniprot/O29388 O29388]
−
** [http://www.uniprot.org/uniprot/Q9PNM7 Q9PNM7]
+
** [http://www.uniprot.org/uniprot/O67236 O67236]
−
** [http://www.uniprot.org/uniprot/O25660 O25660]
+
** [http://www.uniprot.org/uniprot/P65829 P65829]
−
** [http://www.uniprot.org/uniprot/O51663 O51663]
+
** [http://www.uniprot.org/uniprot/O57979 O57979]
−
** [http://www.uniprot.org/uniprot/O67908 O67908]
+
** [http://www.uniprot.org/uniprot/Q9X0X4 Q9X0X4]
−
** [http://www.uniprot.org/uniprot/Q49839 Q49839]
+
** [http://www.uniprot.org/uniprot/Q9RXT6 Q9RXT6]
−
** [http://www.uniprot.org/uniprot/P75520 P75520]
+
** [http://www.uniprot.org/uniprot/Q9K0C4 Q9K0C4]
−
** [http://www.uniprot.org/uniprot/P74372 P74372]
+
** [http://www.uniprot.org/uniprot/Q9V253 Q9V253]
−
** [http://www.uniprot.org/uniprot/Q48959 Q48959]
+
** [http://www.uniprot.org/uniprot/Q9PIT3 Q9PIT3]
−
** [http://www.uniprot.org/uniprot/P0ABF8 P0ABF8]
+
** [http://www.uniprot.org/uniprot/Q57657 Q57657]
−
{{#set: direction=LEFT-TO-RIGHT}}
+
** [http://www.uniprot.org/uniprot/Q9JVC9 Q9JVC9]
−
{{#set: ec number=EC-2.7.8.5}}
+
** [http://www.uniprot.org/uniprot/O26742 O26742]
−
{{#set: in pathway=PWY4FS-7|PWY4FS-8|PWY-5269|PWY-7817|PWY-5668|PWY0-1545}}
+
** [http://www.uniprot.org/uniprot/P43854 P43854]
−
{{#set: reconstruction category=annotation}}
+
** [http://www.uniprot.org/uniprot/P35853 P35853]
−
{{#set: reconstruction source=annotation-in-silico_annotation}}
+
** [http://www.uniprot.org/uniprot/P41390 P41390]
−
{{#set: reconstruction tool=pathwaytools}}
+
** [http://www.uniprot.org/uniprot/Q27601 Q27601]
 +
** [http://www.uniprot.org/uniprot/Q38999 Q38999]
 +
** [http://www.uniprot.org/uniprot/P04046 P04046]
 +
** [http://www.uniprot.org/uniprot/Q55621 Q55621]
 +
** [http://www.uniprot.org/uniprot/Q55038 Q55038]
 +
** [http://www.uniprot.org/uniprot/Q9STG9 Q9STG9]
 +
** [http://www.uniprot.org/uniprot/Q9T0J5 Q9T0J5]
 +
** [http://www.uniprot.org/uniprot/P52418 P52418]
 +
** [http://www.uniprot.org/uniprot/P52419 P52419]
 +
** [http://www.uniprot.org/uniprot/Q22134 Q22134]
 +
** [http://www.uniprot.org/uniprot/Q9ZB05 Q9ZB05]
 +
** [http://www.uniprot.org/uniprot/P00497 P00497]
 +
** [http://www.uniprot.org/uniprot/P0AG16 P0AG16]
 +
{{#set: direction=REVERSIBLE}}
 +
{{#set: common name=ORF}}
 +
{{#set: common name=short-chain_dehydrogenase_reductase}}
 +
{{#set: ec number=EC-2.4.2.14}}
 +
{{#set: gene associated=Tiso_gene_1007|Tiso_gene_9914}}
 +
{{#set: in pathway=PWY-6121|PWY-6122|PWY-7282|PWY-6277}}
 +
{{#set: reconstruction category=orthology|manual|annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 14:45, 21 March 2018

Reaction PRPPAMIDOTRANS-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • ORF
    • short-chain_dehydrogenase_reductase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 L-glutamate[c] + 1 diphosphate[c] + 1 5-phospho-β-D-ribosylamine[c] <=> 1 5-phospho-α-D-ribose 1-diphosphate[c] + 1 H2O[c] + 1 L-glutamine[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6121, 5-aminoimidazole ribonucleotide biosynthesis I: PWY-6121
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-6122, 5-aminoimidazole ribonucleotide biosynthesis II: PWY-6122
    • 4 reactions found over 5 reactions in the full pathway
  • PWY-7282, 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis (yeast): PWY-7282
    • 6 reactions found over 9 reactions in the full pathway
  • PWY-6277, superpathway of 5-aminoimidazole ribonucleotide biosynthesis: PWY-6277
    • 6 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-9527&oldid=29889"