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| − | [[Category:Pathway]] | + | [[Category:Reaction]] |
| − | == Pathway [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY] == | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9629 RXN-9629] == |
| − | * taxonomic range: | + | * direction: |
| − | ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-2759] | + | ** LEFT-TO-RIGHT |
| − | ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2] | + | * ec number: |
| − | ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-2157]
| + | ** [http://enzyme.expasy.org/EC/3.1.2.2 EC-3.1.2.2] |
| − | * common name:
| + | |
| − | ** tRNA charging
| + | |
| | * Synonym(s): | | * Synonym(s): |
| | | | |
| − | == Reaction(s) found == | + | == Reaction Formula == |
| − | '''21''' reactions found over '''21''' reactions in the full pathway
| + | * With identifiers: |
| − | * [[ALANINE--TRNA-LIGASE-RXN]] | + | ** 1 [[WATER]][c] '''+''' 1 [[CPD-9965]][c] '''=>''' 1 [[ARACHIDIC_ACID]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[CO-A]][c] |
| − | ** 5 associated gene(s):
| + | * With common name(s): |
| − | *** [[Tiso_gene_2298]] | + | ** 1 H2O[c] '''+''' 1 icosanoyl-CoA[c] '''=>''' 1 arachidate[c] '''+''' 1 H+[c] '''+''' 1 coenzyme A[c] |
| − | *** [[Tiso_gene_3249]]
| + | |
| − | *** [[Tiso_gene_18607]]
| + | == Genes associated with this reaction == |
| − | *** [[Tiso_gene_18609]]
| + | Genes have been associated with this reaction based on different elements listed below. |
| − | *** [[Tiso_gene_19573]]
| + | * Gene: [[Tiso_gene_7477]] |
| − | ** 3 reconstruction source(s) associated:
| + | ** Source: [[orthology-athaliana]] |
| − | *** [[annotation-in-silico_annotation]]
| + | == Pathways == |
| − | *** [[annotation-experimental_annotation]]
| + | == Reconstruction information == |
| − | *** [[orthology-esiliculosus]]
| + | * Category: [[orthology]] |
| − | * [[ARGININE--TRNA-LIGASE-RXN]]
| + | ** Source: [[orthology-athaliana]] |
| − | ** 2 associated gene(s):
| + | *** Tool: [[pantograph]] |
| − | *** [[Tiso_gene_12997]]
| + | |
| − | *** [[Tiso_gene_16360]]
| + | |
| − | ** 3 reconstruction source(s) associated:
| + | |
| − | *** [[annotation-in-silico_annotation]]
| + | |
| − | *** [[annotation-experimental_annotation]]
| + | |
| − | *** [[orthology-esiliculosus]] | + | |
| − | * [[ASPARAGINE--TRNA-LIGASE-RXN]]
| + | |
| − | ** 5 associated gene(s):
| + | |
| − | *** [[Tiso_gene_9303]] | + | |
| − | *** [[Tiso_gene_9304]]
| + | |
| − | *** [[Tiso_gene_9908]]
| + | |
| − | *** [[Tiso_gene_13908]]
| + | |
| − | *** [[Tiso_gene_6065]]
| + | |
| − | ** 2 reconstruction source(s) associated:
| + | |
| − | *** [[annotation-experimental_annotation]]
| + | |
| − | *** [[annotation-in-silico_annotation]]
| + | |
| − | * [[ASPARTATE--TRNA-LIGASE-RXN]]
| + | |
| − | ** 3 associated gene(s):
| + | |
| − | *** [[Tiso_gene_17185]]
| + | |
| − | *** [[Tiso_gene_7126]]
| + | |
| − | *** [[Tiso_gene_13081]]
| + | |
| − | ** 3 reconstruction source(s) associated:
| + | |
| − | *** [[annotation-in-silico_annotation]]
| + | |
| − | *** [[annotation-experimental_annotation]]
| + | |
| − | *** [[orthology-esiliculosus]]
| + | |
| − | * [[CYSTEINE--TRNA-LIGASE-RXN]]
| + | |
| − | ** 2 associated gene(s):
| + | |
| − | *** [[Tiso_gene_10881]] | + | |
| − | *** [[Tiso_gene_17657]]
| + | |
| − | ** 3 reconstruction source(s) associated:
| + | |
| − | *** [[annotation-in-silico_annotation]]
| + | |
| − | *** [[annotation-experimental_annotation]] | + | |
| − | *** [[orthology-esiliculosus]]
| + | |
| − | * [[GLURS-RXN]]
| + | |
| − | ** 2 associated gene(s):
| + | |
| − | *** [[Tiso_gene_5379]]
| + | |
| − | *** [[Tiso_gene_5046]]
| + | |
| − | ** 4 reconstruction source(s) associated:
| + | |
| − | *** [[annotation-in-silico_annotation]]
| + | |
| − | *** [[manual-primary_network]]
| + | |
| − | *** [[annotation-experimental_annotation]]
| + | |
| − | *** [[orthology-esiliculosus]]
| + | |
| − | * [[GLUTAMINE--TRNA-LIGASE-RXN]]
| + | |
| − | ** 3 associated gene(s):
| + | |
| − | *** [[Tiso_gene_5915]] | + | |
| − | *** [[Tiso_gene_11124]]
| + | |
| − | *** [[Tiso_gene_7596]]
| + | |
| − | ** 3 reconstruction source(s) associated:
| + | |
| − | *** [[annotation-experimental_annotation]]
| + | |
| − | *** [[annotation-in-silico_annotation]]
| + | |
| − | *** [[orthology-esiliculosus]]
| + | |
| − | * [[GLYCINE--TRNA-LIGASE-RXN]] | + | |
| − | ** 3 associated gene(s): | + | |
| − | *** [[Tiso_gene_14743]]
| + | |
| − | *** [[Tiso_gene_14742]]
| + | |
| − | *** [[Tiso_gene_3788]]
| + | |
| − | ** 3 reconstruction source(s) associated:
| + | |
| − | *** [[annotation-in-silico_annotation]]
| + | |
| − | *** [[annotation-experimental_annotation]]
| + | |
| − | *** [[orthology-esiliculosus]]
| + | |
| − | * [[HISTIDINE--TRNA-LIGASE-RXN]] | + | |
| − | ** 3 associated gene(s): | + | |
| − | *** [[Tiso_gene_12634]]
| + | |
| − | *** [[Tiso_gene_13414]]
| + | |
| − | *** [[Tiso_gene_8798]]
| + | |
| − | ** 3 reconstruction source(s) associated:
| + | |
| − | *** [[annotation-in-silico_annotation]]
| + | |
| − | *** [[annotation-experimental_annotation]]
| + | |
| − | *** [[orthology-esiliculosus]]
| + | |
| − | * [[ISOLEUCINE--TRNA-LIGASE-RXN]]
| + | |
| − | ** 2 associated gene(s):
| + | |
| − | *** [[Tiso_gene_12496]]
| + | |
| − | *** [[Tiso_gene_11779]]
| + | |
| − | ** 3 reconstruction source(s) associated:
| + | |
| − | *** [[annotation-in-silico_annotation]]
| + | |
| − | *** [[annotation-experimental_annotation]]
| + | |
| − | *** [[orthology-esiliculosus]]
| + | |
| − | * [[LEUCINE--TRNA-LIGASE-RXN]]
| + | |
| − | ** 2 associated gene(s):
| + | |
| − | *** [[Tiso_gene_11524]]
| + | |
| − | *** [[Tiso_gene_15439]]
| + | |
| − | ** 3 reconstruction source(s) associated:
| + | |
| − | *** [[annotation-experimental_annotation]]
| + | |
| − | *** [[annotation-in-silico_annotation]]
| + | |
| − | *** [[orthology-esiliculosus]]
| + | |
| − | * [[LYSINE--TRNA-LIGASE-RXN]]
| + | |
| − | ** 2 associated gene(s):
| + | |
| − | *** [[Tiso_gene_6705]]
| + | |
| − | *** [[Tiso_gene_16635]]
| + | |
| − | ** 3 reconstruction source(s) associated:
| + | |
| − | *** [[annotation-in-silico_annotation]]
| + | |
| − | *** [[annotation-experimental_annotation]]
| + | |
| − | *** [[orthology-esiliculosus]]
| + | |
| − | * [[METHIONINE--TRNA-LIGASE-RXN]]
| + | |
| − | ** 2 associated gene(s):
| + | |
| − | *** [[Tiso_gene_284]]
| + | |
| − | *** [[Tiso_gene_406]]
| + | |
| − | ** 3 reconstruction source(s) associated:
| + | |
| − | *** [[annotation-in-silico_annotation]]
| + | |
| − | *** [[annotation-experimental_annotation]]
| + | |
| − | *** [[orthology-esiliculosus]]
| + | |
| − | * [[PHENYLALANINE--TRNA-LIGASE-RXN]]
| + | |
| − | ** 4 associated gene(s):
| + | |
| − | *** [[Tiso_gene_16467]]
| + | |
| − | *** [[Tiso_gene_4232]]
| + | |
| − | *** [[Tiso_gene_16650]]
| + | |
| − | *** [[Tiso_gene_1625]]
| + | |
| − | ** 3 reconstruction source(s) associated:
| + | |
| − | *** [[annotation-in-silico_annotation]]
| + | |
| − | *** [[annotation-experimental_annotation]]
| + | |
| − | *** [[orthology-esiliculosus]]
| + | |
| − | * [[PROLINE--TRNA-LIGASE-RXN]]
| + | |
| − | ** 2 associated gene(s):
| + | |
| − | *** [[Tiso_gene_11974]]
| + | |
| − | *** [[Tiso_gene_14791]]
| + | |
| − | ** 3 reconstruction source(s) associated:
| + | |
| − | *** [[annotation-experimental_annotation]]
| + | |
| − | *** [[annotation-in-silico_annotation]]
| + | |
| − | *** [[orthology-esiliculosus]]
| + | |
| − | * [[RXN-16165]]
| + | |
| − | ** 2 associated gene(s):
| + | |
| − | *** [[Tiso_gene_406]]
| + | |
| − | *** [[Tiso_gene_284]]
| + | |
| − | ** 2 reconstruction source(s) associated:
| + | |
| − | *** [[annotation-in-silico_annotation]]
| + | |
| − | *** [[annotation-experimental_annotation]]
| + | |
| − | * [[SERINE--TRNA-LIGASE-RXN]]
| + | |
| − | ** 4 associated gene(s):
| + | |
| − | *** [[Tiso_gene_1682]]
| + | |
| − | *** [[Tiso_gene_10015]]
| + | |
| − | *** [[Tiso_gene_1684]]
| + | |
| − | *** [[Tiso_gene_587]]
| + | |
| − | ** 3 reconstruction source(s) associated:
| + | |
| − | *** [[annotation-in-silico_annotation]]
| + | |
| − | *** [[annotation-experimental_annotation]]
| + | |
| − | *** [[orthology-esiliculosus]]
| + | |
| − | * [[THREONINE--TRNA-LIGASE-RXN]]
| + | |
| − | ** 2 associated gene(s):
| + | |
| − | *** [[Tiso_gene_13142]]
| + | |
| − | *** [[Tiso_gene_4406]]
| + | |
| − | ** 3 reconstruction source(s) associated:
| + | |
| − | *** [[annotation-experimental_annotation]]
| + | |
| − | *** [[annotation-in-silico_annotation]]
| + | |
| − | *** [[orthology-esiliculosus]]
| + | |
| − | * [[TRYPTOPHAN--TRNA-LIGASE-RXN]]
| + | |
| − | ** 3 associated gene(s):
| + | |
| − | *** [[Tiso_gene_14318]]
| + | |
| − | *** [[Tiso_gene_14319]]
| + | |
| − | *** [[Tiso_gene_12988]]
| + | |
| − | ** 3 reconstruction source(s) associated:
| + | |
| − | *** [[annotation-experimental_annotation]]
| + | |
| − | *** [[annotation-in-silico_annotation]]
| + | |
| − | *** [[orthology-esiliculosus]]
| + | |
| − | * [[TYROSINE--TRNA-LIGASE-RXN]]
| + | |
| − | ** 4 associated gene(s):
| + | |
| − | *** [[Tiso_gene_4174]]
| + | |
| − | *** [[Tiso_gene_12171]]
| + | |
| − | *** [[Tiso_gene_10378]]
| + | |
| − | *** [[Tiso_gene_4175]]
| + | |
| − | ** 3 reconstruction source(s) associated:
| + | |
| − | *** [[annotation-in-silico_annotation]]
| + | |
| − | *** [[annotation-experimental_annotation]]
| + | |
| − | *** [[orthology-esiliculosus]]
| + | |
| − | * [[VALINE--TRNA-LIGASE-RXN]]
| + | |
| − | ** 2 associated gene(s):
| + | |
| − | *** [[Tiso_gene_1372]]
| + | |
| − | *** [[Tiso_gene_8041]]
| + | |
| − | ** 3 reconstruction source(s) associated:
| + | |
| − | *** [[annotation-in-silico_annotation]]
| + | |
| − | *** [[annotation-experimental_annotation]]
| + | |
| − | *** [[orthology-esiliculosus]]
| + | |
| − | == Reaction(s) not found ==
| + | |
| | == External links == | | == External links == |
| − | * ECOCYC: | + | * LIGAND-RXN: |
| − | ** [http://metacyc.org/ECOLI/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY] | + | ** [http://www.genome.jp/dbget-bin/www_bget?R08175 R08175] |
| − | {{#set: taxonomic range=TAX-2759}} | + | {{#set: direction=LEFT-TO-RIGHT}} |
| − | {{#set: taxonomic range=TAX-2}} | + | {{#set: ec number=EC-3.1.2.2}} |
| − | {{#set: taxonomic range=TAX-2157}} | + | {{#set: gene associated=Tiso_gene_7477}} |
| − | {{#set: common name=tRNA charging}} | + | {{#set: in pathway=}} |
| − | {{#set: reaction found=21}} | + | {{#set: reconstruction category=orthology}} |
| − | {{#set: total reaction=21}} | + | {{#set: reconstruction source=orthology-athaliana}} |
| − | {{#set: completion rate=100.0}} | + | {{#set: reconstruction tool=pantograph}} |
Genes have been associated with this reaction based on different elements listed below.
