Difference between revisions of "CPD-786"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=HOMOGENTISATE-12-DIOXYGENASE-RXN HOMOGENTISATE-12-DIOXYGENASE-RXN] == * direction: ** LEFT-TO-RIGHT...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-4984 PWY-4984] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2] **...")
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=HOMOGENTISATE-12-DIOXYGENASE-RXN HOMOGENTISATE-12-DIOXYGENASE-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-4984 PWY-4984] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-2759]
 
* common name:
 
* common name:
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** homogentisate_-dioxygenase
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** urea cycle
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* ec number:
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** [http://enzyme.expasy.org/EC/1.13.11.5 EC-1.13.11.5]
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* Synonym(s):
 
* Synonym(s):
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** Krebs ornithine cycle
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** Krebs-Henseleit cycle
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''5''' reactions found over '''5''' reactions in the full pathway
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** 1 [[HOMOGENTISATE]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[4-MALEYL-ACETOACETATE]][c] '''+''' 1 [[PROTON]][c]
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* [[ARGINASE-RXN]]
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* With common name(s):
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** 1 associated gene(s):
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** 1 homogentisate[c] '''+''' 1 oxygen[c] '''=>''' 1 4-maleyl-acetoacetate[c] '''+''' 1 H+[c]
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*** [[Tiso_gene_4415]]
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** 4 reconstruction source(s) associated:
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== Genes associated with this reaction  ==
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*** [[annotation-in-silico_annotation]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[orthology-athaliana]]
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* [[Tiso_gene_20095]]
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*** [[annotation-experimental_annotation]]
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** IN-SILICO_ANNOTATION
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*** [[orthology-esiliculosus]]
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***AUTOMATED-NAME-MATCH
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* [[ARGSUCCINLYA-RXN]]
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** [[pantograph]]-[[esiliculosus]]
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** 1 associated gene(s):
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== Pathways  ==
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*** [[Tiso_gene_2485]]
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* [[TYRFUMCAT-PWY]], L-tyrosine degradation I: [http://metacyc.org/META/NEW-IMAGE?object=TYRFUMCAT-PWY TYRFUMCAT-PWY]
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** 7 reconstruction source(s) associated:
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** '''4''' reactions found over '''5''' reactions in the full pathway
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*** [[annotation-experimental_annotation]]
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== Reconstruction information  ==
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*** [[orthology-esiliculosus]]
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* Category: [[orthology]]
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*** [[annotation-in-silico_annotation]]
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** Source: [[orthology-esiliculosus]]
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*** [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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*** [[orthology-synechocystis]]
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* Category: [[annotation]]
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*** [[manual-primary_network]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[orthology-creinhardtii]]
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*** Tool: [[pathwaytools]]
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* [[ARGSUCCINSYN-RXN]]
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** 1 associated gene(s):
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*** [[Tiso_gene_12592]]
 +
** 7 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[ORNCARBAMTRANSFER-RXN]]
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** 1 associated gene(s):
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*** [[Tiso_gene_18444]]
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** 7 reconstruction source(s) associated:
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[RXN-13202]]
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** 3 associated gene(s):
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*** [[Tiso_gene_4976]]
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*** [[Tiso_gene_4685]]
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*** [[Tiso_gene_4975]]
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** 3 reconstruction source(s) associated:
 +
*** [[annotation-in-silico_annotation]]
 +
*** [[annotation-experimental_annotation]]
 +
*** [[orthology-esiliculosus]]
 +
== Reaction(s) not found ==
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: taxonomic range=TAX-2}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15449 15449]
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{{#set: taxonomic range=TAX-2759}}
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* LIGAND-RXN:
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{{#set: common name=urea cycle}}
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** [http://www.genome.jp/dbget-bin/www_bget?R02519 R02519]
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{{#set: common name=Krebs ornithine cycle|Krebs-Henseleit cycle}}
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* UNIPROT:
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{{#set: reaction found=5}}
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** [http://www.uniprot.org/uniprot/Q9Y041 Q9Y041]
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{{#set: total reaction=5}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: completion rate=100.0}}
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{{#set: common name=homogentisate_-dioxygenase}}
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{{#set: ec number=EC-1.13.11.5}}
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−
{{#set: gene associated=Tiso_gene_20095}}
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−
{{#set: in pathway=TYRFUMCAT-PWY}}
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−
{{#set: reconstruction category=orthology|annotation}}
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−
{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
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−
{{#set: reconstruction tool=pantograph|pathwaytools}}
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Revision as of 14:46, 21 March 2018

Pathway PWY-4984

  • taxonomic range:
  • common name:
    • urea cycle
  • Synonym(s):
    • Krebs ornithine cycle
    • Krebs-Henseleit cycle

Reaction(s) found

5 reactions found over 5 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=CPD-786&oldid=30085"