Difference between revisions of "RXN-16540"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7376 PWY-7376] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2] **...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.1.3.37-RXN 1.1.3.37-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF ** xylitol_oxidas...")
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7376 PWY-7376] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.1.3.37-RXN 1.1.3.37-RXN] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-2157]
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* common name:
 
* common name:
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** cob(II)yrinate a,c-diamide biosynthesis II (late cobalt incorporation)
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** ORF
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** xylitol_oxidase
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** mitochondrial_l-galactono-_-lactone_dehydrogenase
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* ec number:
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** [http://enzyme.expasy.org/EC/1.1.3.37 EC-1.1.3.37]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''2''' reactions found over '''13''' reactions in the full pathway
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* With identifiers:
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* [[RXN-8675]]
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** 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[CPD-356]][c] '''=>''' 1 [[CPD-1789]][c] '''+''' 1 [[HYDROGEN-PEROXIDE]][c]
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** 1 associated gene(s):
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* With common name(s):
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*** [[Tiso_gene_8614]]
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** 1 oxygen[c] '''+''' 1 D-arabinono-1,4-lactone[c] '''=>''' 1 dehydro-D-arabinono-1,4-lactone[c] '''+''' 1 hydrogen peroxide[c]
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** 1 reconstruction source(s) associated:
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*** [[orthology-esiliculosus]]
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== Genes associated with this reaction  ==
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* [[UROPORIIIMETHYLTRANSA-RXN]]
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Genes have been associated with this reaction based on different elements listed below.
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** 1 associated gene(s):
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* Gene: [[Tiso_gene_210]]
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*** [[Tiso_gene_8614]]
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** Source: [[annotation-in-silico_annotation]]
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** 1 reconstruction source(s) associated:
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*** Assignment: EC-NUMBER
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*** [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_14187]]
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== Reaction(s) not found ==
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** Source: [[annotation-in-silico_annotation]]
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* [http://metacyc.org/META/NEW-IMAGE?object=1.3.1.54-RXN 1.3.1.54-RXN]
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*** Assignment: EC-NUMBER
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* [http://metacyc.org/META/NEW-IMAGE?object=2.1.1.130-RXN 2.1.1.130-RXN]
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* Gene: [[Tiso_gene_6787]]
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* [http://metacyc.org/META/NEW-IMAGE?object=2.1.1.131-RXN 2.1.1.131-RXN]
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** Source: [[annotation-in-silico_annotation]]
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* [http://metacyc.org/META/NEW-IMAGE?object=2.1.1.133-RXN 2.1.1.133-RXN]
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*** Assignment: EC-NUMBER
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* [http://metacyc.org/META/NEW-IMAGE?object=5.4.1.2-RXN 5.4.1.2-RXN]
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== Pathways  ==
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* [http://metacyc.org/META/NEW-IMAGE?object=R321-RXN R321-RXN]
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* [[PWY3O-6]], dehydro-D-arabinono-1,4-lactone biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY3O-6 PWY3O-6]
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* [http://metacyc.org/META/NEW-IMAGE?object=R322-RXN R322-RXN]
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** '''1''' reactions found over '''3''' reactions in the full pathway
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* [http://metacyc.org/META/NEW-IMAGE?object=R341-RXN R341-RXN]
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== Reconstruction information  ==
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* [http://metacyc.org/META/NEW-IMAGE?object=R342-RXN R342-RXN]
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* Category: [[annotation]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-13824 RXN-13824]
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** Source: [[annotation-in-silico_annotation]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-13826 RXN-13826]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: taxonomic range=TAX-2}}
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* RHEA:
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{{#set: taxonomic range=TAX-2157}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23756 23756]
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{{#set: common name=cob(II)yrinate a,c-diamide biosynthesis II (late cobalt incorporation)}}
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* LIGAND-RXN:
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{{#set: reaction found=2}}
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** [http://www.genome.jp/dbget-bin/www_bget?R02715 R02715]
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{{#set: total reaction=13}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: completion rate=15.0}}
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{{#set: common name=ORF}}
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{{#set: common name=xylitol_oxidase}}
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{{#set: common name=mitochondrial_l-galactono-_-lactone_dehydrogenase}}
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{{#set: ec number=EC-1.1.3.37}}
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{{#set: gene associated=Tiso_gene_210|Tiso_gene_14187|Tiso_gene_6787}}
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{{#set: in pathway=PWY3O-6}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation}}
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{{#set: reconstruction tool=pathwaytools}}

Revision as of 14:47, 21 March 2018

Reaction 1.1.3.37-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • ORF
    • xylitol_oxidase
    • mitochondrial_l-galactono-_-lactone_dehydrogenase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY3O-6, dehydro-D-arabinono-1,4-lactone biosynthesis: PWY3O-6
    • 1 reactions found over 3 reactions in the full pathway

Reconstruction information

External links






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