Difference between revisions of "Tiso gene 2108"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-5285 RXN-5285] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF ** protochlorophyllide_re...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5740 PWY-5740] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1224 TAX-12...")
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[[Category:Reaction]]
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[[Category:Pathway]]
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-5285 RXN-5285] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5740 PWY-5740] ==
* direction:
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* taxonomic range:
** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1224 TAX-1224]
 
* common name:
 
* common name:
** ORF
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** GDP-L-colitose biosynthesis
** protochlorophyllide_reductase
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* ec number:
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** [http://enzyme.expasy.org/EC/1.3.1.33 EC-1.3.1.33]
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* Synonym(s):
 
* Synonym(s):
  
== Reaction Formula ==
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== Reaction(s) found ==
* With identifiers:
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'''1''' reactions found over '''5''' reactions in the full pathway
** 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[DIVINYL-PROTOCHLOROPHYLLIDE-A]][c] '''=>''' 1 [[NADP]][c] '''+''' 1 [[DIVINYLCHLOROPHYLLIDE-A]][c]
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* [[GDPMANDEHYDRA-RXN]]
* With common name(s):
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** 2 associated gene(s):
** 1 NADPH[c] '''+''' 1 H+[c] '''+''' 1 3,8-divinyl protochlorophyllide a[c] '''=>''' 1 NADP+[c] '''+''' 1 3,8-divinyl chlorophyllide a[c]
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*** [[Tiso_gene_13093]]
 
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*** [[Tiso_gene_13092]]
== Genes associated with this reaction  ==
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** 3 reconstruction source(s) associated:
Genes have been associated with this reaction based on different elements listed below.
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*** [[orthology-athaliana]]
* [[Tiso_gene_17141]]
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*** [[annotation-experimental_annotation]]
** IN-SILICO_ANNOTATION
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*** [[orthology-esiliculosus]]
***EC-NUMBER
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== Reaction(s) not found ==
** EXPERIMENTAL_ANNOTATION
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-15217 RXN-15217]
***EC-NUMBER
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-15218 RXN-15218]
** [[pantograph]]-[[esiliculosus]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8954 RXN-8954]
* [[Tiso_gene_19518]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-8955 RXN-8955]
** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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* [[Tiso_gene_10077]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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== Pathways  ==
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* [[CHLOROPHYLL-SYN]], 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent): [http://metacyc.org/META/NEW-IMAGE?object=CHLOROPHYLL-SYN CHLOROPHYLL-SYN]
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** '''9''' reactions found over '''9''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[manual]]
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** Source: [[manual-primary_network]]
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* Category: [[annotation]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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== External links  ==
 
== External links  ==
* LIGAND-RXN:
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{{#set: taxonomic range=TAX-1224}}
** [http://www.genome.jp/dbget-bin/www_bget?R06286 R06286]
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{{#set: common name=GDP-L-colitose biosynthesis}}
{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: reaction found=1}}
{{#set: common name=ORF}}
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{{#set: total reaction=5}}
{{#set: common name=protochlorophyllide_reductase}}
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{{#set: completion rate=20.0}}
{{#set: ec number=EC-1.3.1.33}}
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{{#set: gene associated=Tiso_gene_17141|Tiso_gene_19518|Tiso_gene_10077}}
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{{#set: in pathway=CHLOROPHYLL-SYN}}
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{{#set: reconstruction category=orthology|manual|annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|manual-primary_network|annotation-in-silico_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Revision as of 15:50, 21 March 2018

Pathway PWY-5740

  • taxonomic range:
  • common name:
    • GDP-L-colitose biosynthesis
  • Synonym(s):

Reaction(s) found

1 reactions found over 5 reactions in the full pathway

Reaction(s) not found

External links