Difference between revisions of "DTMPKI-RXN"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-8607 CPD-8607] == * smiles: ** CC(C)CCCC([CH]4(C1(C)(C(CO)(C2(=C(CC1)C3(C)([CH](CC2)C(C)(C)...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLYRIBONUCSYN-RXN GLYRIBONUCSYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** phosphoribo...")
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-8607 CPD-8607] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLYRIBONUCSYN-RXN GLYRIBONUCSYN-RXN] ==
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* smiles:
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* direction:
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** CC(C)CCCC([CH]4(C1(C)(C(CO)(C2(=C(CC1)C3(C)([CH](CC2)C(C)(C)C(O)CC3)))CC4)))C
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** LEFT-TO-RIGHT
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* inchi key:
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** InChIKey=SJPDNXKPBQHPMZ-PUXRVUTHSA-N
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* common name:
 
* common name:
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** 4,4-dimethyl-14α-hydroxymethyl-5α-cholesta-8-en-3β-ol
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** phosphoribosylamine--glycine_ligase
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* molecular weight:
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* ec number:
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** 444.74   
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** [http://enzyme.expasy.org/EC/6.3.4.13 EC-6.3.4.13]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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* [[RXN66-12]]
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* With identifiers:
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== Reaction(s) known to produce the compound ==
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** 1 [[5-P-BETA-D-RIBOSYL-AMINE]][c] '''+''' 1 [[GLY]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[Pi]][c] '''+''' 1 [[5-PHOSPHO-RIBOSYL-GLYCINEAMIDE]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[PROTON]][c]
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* [[RXN66-11]]
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* With common name(s):
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== Reaction(s) of unknown directionality ==
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** 1 5-phospho-β-D-ribosylamine[c] '''+''' 1 glycine[c] '''+''' 1 ATP[c] '''=>''' 1 phosphate[c] '''+''' 1 N1-(5-phospho-β-D-ribosyl)glycinamide[c] '''+''' 1 ADP[c] '''+''' 1 H+[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Tiso_gene_1369]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-athaliana]]
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** Source: [[orthology-esiliculosus]]
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== Pathways  ==
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* [[PWY-6121]], 5-aminoimidazole ribonucleotide biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6121 PWY-6121]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-6122]], 5-aminoimidazole ribonucleotide biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6122 PWY-6122]
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** '''4''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-6277]], superpathway of 5-aminoimidazole ribonucleotide biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6277 PWY-6277]
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** '''6''' reactions found over '''9''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[manual]]
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** Source: [[manual-primary_network]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* PUBCHEM:
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* RHEA:
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=15698821 15698821]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17453 17453]
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* CHEBI:
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* LIGAND-RXN:
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=87057 87057]
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** [http://www.genome.jp/dbget-bin/www_bget?R04144 R04144]
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* HMDB : HMDB12160
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* UNIPROT:
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{{#set: smiles=CC(C)CCCC([CH]4(C1(C)(C(CO)(C2(=C(CC1)C3(C)([CH](CC2)C(C)(C)C(O)CC3)))CC4)))C}}
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** [http://www.uniprot.org/uniprot/P07244 P07244]
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{{#set: inchi key=InChIKey=SJPDNXKPBQHPMZ-PUXRVUTHSA-N}}
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** [http://www.uniprot.org/uniprot/Q58347 Q58347]
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{{#set: common name=4,4-dimethyl-14α-hydroxymethyl-5α-cholesta-8-en-3β-ol}}
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** [http://www.uniprot.org/uniprot/P12039 P12039]
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{{#set: molecular weight=444.74    }}
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** [http://www.uniprot.org/uniprot/P21872 P21872]
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{{#set: consumed by=RXN66-12}}
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** [http://www.uniprot.org/uniprot/P15640 P15640]
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{{#set: produced by=RXN66-11}}
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** [http://www.uniprot.org/uniprot/P00967 P00967]
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** [http://www.uniprot.org/uniprot/P16340 P16340]
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** [http://www.uniprot.org/uniprot/P22102 P22102]
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** [http://www.uniprot.org/uniprot/Q9JWU6 Q9JWU6]
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** [http://www.uniprot.org/uniprot/P43845 P43845]
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** [http://www.uniprot.org/uniprot/Q9PN47 Q9PN47]
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** [http://www.uniprot.org/uniprot/Q64737 Q64737]
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** [http://www.uniprot.org/uniprot/P20772 P20772]
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** [http://www.uniprot.org/uniprot/P26977 P26977]
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** [http://www.uniprot.org/uniprot/Q59492 Q59492]
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** [http://www.uniprot.org/uniprot/P74232 P74232]
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** [http://www.uniprot.org/uniprot/Q42804 Q42804]
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** [http://www.uniprot.org/uniprot/P52421 P52421]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=phosphoribosylamine--glycine_ligase}}
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{{#set: ec number=EC-6.3.4.13}}
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{{#set: gene associated=Tiso_gene_1369}}
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{{#set: in pathway=PWY-6121|PWY-6122|PWY-6277}}
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{{#set: reconstruction category=orthology|manual|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|manual-primary_network|annotation-experimental_annotation|orthology-athaliana|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 14:51, 21 March 2018

Reaction GLYRIBONUCSYN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • phosphoribosylamine--glycine_ligase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6121, 5-aminoimidazole ribonucleotide biosynthesis I: PWY-6121
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-6122, 5-aminoimidazole ribonucleotide biosynthesis II: PWY-6122
    • 4 reactions found over 5 reactions in the full pathway
  • PWY-6277, superpathway of 5-aminoimidazole ribonucleotide biosynthesis: PWY-6277
    • 6 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





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