Difference between revisions of "BCCP-biotin-monomers"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=UROGENIIISYN-RXN UROGENIIISYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF ** uropor...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7602 PWY-7602] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33682 TAX-3...")
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=UROGENIIISYN-RXN UROGENIIISYN-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7602 PWY-7602] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33682 TAX-33682]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2830 TAX-2830]
 
* common name:
 
* common name:
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** ORF
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** icosapentaenoate biosynthesis V (8-desaturase, lower eukaryotes)
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** uroporphyrinogen_synthase
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* ec number:
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** [http://enzyme.expasy.org/EC/4.2.1.75 EC-4.2.1.75]
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''7''' reactions found over '''7''' reactions in the full pathway
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** 1 [[HYDROXYMETHYLBILANE]][c] '''=>''' 1 [[UROPORPHYRINOGEN-III]][c] '''+''' 1 [[WATER]][c]
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* [[RXN-12994]]
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* With common name(s):
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** 3 associated gene(s):
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** 1 preuroporphyrinogen[c] '''=>''' 1 uroporphyrinogen-III[c] '''+''' 1 H2O[c]
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*** [[Tiso_gene_9885]]
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*** [[Tiso_gene_13083]]
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== Genes associated with this reaction  ==
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*** [[Tiso_gene_9871]]
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Genes have been associated with this reaction based on different elements listed below.
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** 3 reconstruction source(s) associated:
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* [[Tiso_gene_11630]]
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*** [[annotation-in-silico_annotation]]
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** IN-SILICO_ANNOTATION
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*** [[annotation-experimental_annotation]]
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***EC-NUMBER
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*** [[orthology-esiliculosus]]
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** [[pantograph]]-[[esiliculosus]]
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* [[RXN-12997]]
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** [[pantograph]]-[[creinhardtii]]
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** 0 associated gene:
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* [[Tiso_gene_18827]]
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** 1 reconstruction source(s) associated:
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** IN-SILICO_ANNOTATION
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*** [[annotation-in-silico_annotation]]
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***EC-NUMBER
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* [[RXN-13001]]
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== Pathways  ==
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** 0 associated gene:
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* [[PWY-5189]], tetrapyrrole biosynthesis II (from glycine): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5189 PWY-5189]
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** 1 reconstruction source(s) associated:
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** '''3''' reactions found over '''4''' reactions in the full pathway
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*** [[annotation-in-silico_annotation]]
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* [[PWY-5188]], tetrapyrrole biosynthesis I (from glutamate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5188 PWY-5188]
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* [[RXN-13441]]
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** '''6''' reactions found over '''6''' reactions in the full pathway
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** 0 associated gene:
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== Reconstruction information  ==
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** 1 reconstruction source(s) associated:
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* Category: [[orthology]]
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*** [[annotation-in-silico_annotation]]
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** Source: [[orthology-creinhardtii]]
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* [[RXN-16100]]
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*** Tool: [[pantograph]]
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** 0 associated gene:
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** Source: [[orthology-esiliculosus]]
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** 1 reconstruction source(s) associated:
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*** Tool: [[pantograph]]
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*** [[annotation-in-silico_annotation]]
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* Category: [[manual]]
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* [[RXN-16101]]
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** Source: [[manual-primary_network]]
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** 1 associated gene(s):
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* Category: [[annotation]]
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*** [[Tiso_gene_5024]]
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** Source: [[annotation-in-silico_annotation]]
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** 1 reconstruction source(s) associated:
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*** Tool: [[pathwaytools]]
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*** [[annotation-in-silico_annotation]]
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* [[RXN-8350]]
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** 0 associated gene:
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** 1 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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== Reaction(s) not found ==
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: taxonomic range=TAX-33682}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18965 18965]
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{{#set: taxonomic range=TAX-2830}}
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* LIGAND-RXN:
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{{#set: common name=icosapentaenoate biosynthesis V (8-desaturase, lower eukaryotes)}}
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** [http://www.genome.jp/dbget-bin/www_bget?R03165 R03165]
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{{#set: reaction found=7}}
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* UNIPROT:
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{{#set: total reaction=7}}
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** [http://www.uniprot.org/uniprot/P10746 P10746]
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{{#set: completion rate=100.0}}
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** [http://www.uniprot.org/uniprot/P51163 P51163]
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** [http://www.uniprot.org/uniprot/P21248 P21248]
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** [http://www.uniprot.org/uniprot/Q58401 Q58401]
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** [http://www.uniprot.org/uniprot/P09126 P09126]
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** [http://www.uniprot.org/uniprot/Q59294 Q59294]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=ORF}}
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{{#set: common name=uroporphyrinogen_synthase}}
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{{#set: ec number=EC-4.2.1.75}}
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{{#set: gene associated=Tiso_gene_11630|Tiso_gene_18827}}
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{{#set: in pathway=PWY-5189|PWY-5188}}
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{{#set: reconstruction category=orthology|manual|annotation}}
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{{#set: reconstruction source=orthology-creinhardtii|manual-primary_network|annotation-in-silico_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Revision as of 14:51, 21 March 2018

Pathway PWY-7602

  • taxonomic range:
  • common name:
    • icosapentaenoate biosynthesis V (8-desaturase, lower eukaryotes)
  • Synonym(s):

Reaction(s) found

7 reactions found over 7 reactions in the full pathway

Reaction(s) not found

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=BCCP-biotin-monomers&oldid=30773"