Difference between revisions of "RXN-12753"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PPCOAOm PPCOAOm] == * direction: ** REVERSIBLE * common name: ** Propanoyl-CoA:(acceptor) 2,3-oxido...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=4-COUMARATE--COA-LIGASE-RXN 4-COUMARATE--COA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * ec numb...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PPCOAOm PPCOAOm] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=4-COUMARATE--COA-LIGASE-RXN 4-COUMARATE--COA-LIGASE-RXN] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
−
* common name:
+
* ec number:
−
** Propanoyl-CoA:(acceptor) 2,3-oxidoreductase
+
** [http://enzyme.expasy.org/EC/6.2.1.12 EC-6.2.1.12]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1.0 [[FAD]][m] '''+''' 1.0 [[PROPIONYL-COA]][m] '''<=>''' 1.0 [[FADH2]][m] '''+''' 1.0 [[ACRYLYL-COA]][m]
+
** 1 [[ATP]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[COUMARATE]][c] '''=>''' 1 [[P-COUMAROYL-COA]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[AMP]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1.0 FAD[m] '''+''' 1.0 propanoyl-CoA[m] '''<=>''' 1.0 FADH2[m] '''+''' 1.0 acryloyl-CoA[m]
+
** 1 ATP[c] '''+''' 1 coenzyme A[c] '''+''' 1 4-coumarate[c] '''=>''' 1 4-coumaroyl-CoA[c] '''+''' 1 diphosphate[c] '''+''' 1 AMP[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_17967]]
+
* Gene: [[Tiso_gene_12275]]
−
** [[pantograph]]-[[creinhardtii]]
+
** Source: [[orthology-athaliana]]
−
* [[Tiso_gene_8272]]
+
** Source: [[orthology-esiliculosus]]
−
** [[pantograph]]-[[creinhardtii]]
+
* Gene: [[Tiso_gene_14183]]
 +
** Source: [[orthology-esiliculosus]]
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY-6920]], 6-gingerol analog biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6920 PWY-6920]
 +
** '''5''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-6435]], 4-hydroxybenzoate biosynthesis V: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6435 PWY-6435]
 +
** '''4''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-7398]], coumarins biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7398 PWY-7398]
 +
** '''3''' reactions found over '''13''' reactions in the full pathway
 +
* [[PWY-7046]], 4-coumarate degradation (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7046 PWY-7046]
 +
** '''2''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-361]], phenylpropanoid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-361 PWY-361]
 +
** '''7''' reactions found over '''15''' reactions in the full pathway
 +
* [[PWY-7397]], naringenin biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7397 PWY-7397]
 +
** '''2''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-6320]], phaselate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6320 PWY-6320]
 +
** '''1''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY1F-FLAVSYN]], flavonoid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY1F-FLAVSYN PWY1F-FLAVSYN]
 +
** '''4''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-5754]], 4-hydroxybenzoate biosynthesis I (eukaryotes): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5754 PWY-5754]
 +
** '''2''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-5135]], xanthohumol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5135 PWY-5135]
 +
** '''1''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-6982]], umbelliferone biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6982 PWY-6982]
 +
** '''1''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
−
** Source: [[orthology-creinhardtii]]
+
** Source: [[orthology-athaliana]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-esiliculosus]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
−
{{#set: direction=REVERSIBLE}}
+
* RHEA:
−
{{#set: common name=Propanoyl-CoA:(acceptor) 2,3-oxidoreductase}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19641 19641]
−
{{#set: gene associated=Tiso_gene_17967|Tiso_gene_8272}}
+
* LIGAND-RXN:
−
{{#set: in pathway=}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R01616 R01616]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P31684 P31684]
 +
** [http://www.uniprot.org/uniprot/P31685 P31685]
 +
** [http://www.uniprot.org/uniprot/Q9SWH8 Q9SWH8]
 +
** [http://www.uniprot.org/uniprot/Q9SWH7 Q9SWH7]
 +
** [http://www.uniprot.org/uniprot/P17814 P17814]
 +
** [http://www.uniprot.org/uniprot/P31687 P31687]
 +
** [http://www.uniprot.org/uniprot/Q8S5C2 Q8S5C2]
 +
** [http://www.uniprot.org/uniprot/P14912 P14912]
 +
** [http://www.uniprot.org/uniprot/P14913 P14913]
 +
** [http://www.uniprot.org/uniprot/P31686 P31686]
 +
** [http://www.uniprot.org/uniprot/Q42524 Q42524]
 +
** [http://www.uniprot.org/uniprot/Q42943 Q42943]
 +
** [http://www.uniprot.org/uniprot/Q42982 Q42982]
 +
** [http://www.uniprot.org/uniprot/P93360 P93360]
 +
** [http://www.uniprot.org/uniprot/P93361 P93361]
 +
** [http://www.uniprot.org/uniprot/O24146 O24146]
 +
** [http://www.uniprot.org/uniprot/O48868 O48868]
 +
** [http://www.uniprot.org/uniprot/O48869 O48869]
 +
** [http://www.uniprot.org/uniprot/O81139 O81139]
 +
** [http://www.uniprot.org/uniprot/O81140 O81140]
 +
** [http://www.uniprot.org/uniprot/P41636 P41636]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: ec number=EC-6.2.1.12}}
 +
{{#set: gene associated=Tiso_gene_12275|Tiso_gene_14183}}
 +
{{#set: in pathway=PWY-6920|PWY-6435|PWY-7398|PWY-7046|PWY-361|PWY-7397|PWY-6320|PWY1F-FLAVSYN|PWY-5754|PWY-5135|PWY-6982}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction source=orthology-creinhardtii}}
+
{{#set: reconstruction source=orthology-athaliana|orthology-esiliculosus}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}

Revision as of 14:52, 21 March 2018

Reaction 4-COUMARATE--COA-LIGASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 ATP[c] + 1 coenzyme A[c] + 1 4-coumarate[c] => 1 4-coumaroyl-CoA[c] + 1 diphosphate[c] + 1 AMP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6920, 6-gingerol analog biosynthesis (engineered): PWY-6920
    • 5 reactions found over 6 reactions in the full pathway
  • PWY-6435, 4-hydroxybenzoate biosynthesis V: PWY-6435
    • 4 reactions found over 5 reactions in the full pathway
  • PWY-7398, coumarins biosynthesis (engineered): PWY-7398
    • 3 reactions found over 13 reactions in the full pathway
  • PWY-7046, 4-coumarate degradation (anaerobic): PWY-7046
    • 2 reactions found over 6 reactions in the full pathway
  • PWY-361, phenylpropanoid biosynthesis: PWY-361
    • 7 reactions found over 15 reactions in the full pathway
  • PWY-7397, naringenin biosynthesis (engineered): PWY-7397
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-6320, phaselate biosynthesis: PWY-6320
    • 1 reactions found over 5 reactions in the full pathway
  • PWY1F-FLAVSYN, flavonoid biosynthesis: PWY1F-FLAVSYN
    • 4 reactions found over 5 reactions in the full pathway
  • PWY-5754, 4-hydroxybenzoate biosynthesis I (eukaryotes): PWY-5754
    • 2 reactions found over 6 reactions in the full pathway
  • PWY-5135, xanthohumol biosynthesis: PWY-5135
    • 1 reactions found over 4 reactions in the full pathway
  • PWY-6982, umbelliferone biosynthesis: PWY-6982
    • 1 reactions found over 3 reactions in the full pathway

Reconstruction information

External links




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