Difference between revisions of "SELENATE"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=SELENATE SELENATE] == * smiles: ** O=[Se](=O)([O-])[O-] * inchi key: ** InChIKey=QYHFIVBSNOWOCQ...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ARGINASE-RXN ARGINASE-RXN] == * direction: ** REVERSIBLE * ec number: ** [http://enzyme.expasy.org/...")
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=SELENATE SELENATE] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ARGINASE-RXN ARGINASE-RXN] ==
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* smiles:
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* direction:
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** O=[Se](=O)([O-])[O-]
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** REVERSIBLE
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* inchi key:
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* ec number:
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** InChIKey=QYHFIVBSNOWOCQ-UHFFFAOYSA-L
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** [http://enzyme.expasy.org/EC/3.5.3.1 EC-3.5.3.1]
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* common name:
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** selenate
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* molecular weight:
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** 142.958   
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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* [[RXN-12720]]
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* With identifiers:
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== Reaction(s) known to produce the compound ==
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** 1 [[WATER]][c] '''+''' 1 [[ARG]][c] '''<=>''' 1 [[UREA]][c] '''+''' 1 [[L-ORNITHINE]][c]
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== Reaction(s) of unknown directionality ==
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* With common name(s):
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** 1 H2O[c] '''+''' 1 L-arginine[c] '''<=>''' 1 urea[c] '''+''' 1 L-ornithine[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Tiso_gene_4415]]
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** Source: [[orthology-athaliana]]
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** Source: [[orthology-esiliculosus]]
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== Pathways  ==
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* [[ARGASEDEG-PWY]], L-arginine degradation I (arginase pathway): [http://metacyc.org/META/NEW-IMAGE?object=ARGASEDEG-PWY ARGASEDEG-PWY]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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* [[PWY-6922]], L-N&delta;-acetylornithine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6922 PWY-6922]
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** '''6''' reactions found over '''7''' reactions in the full pathway
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* [[ARG-PRO-PWY]], L-arginine degradation VI (arginase 2 pathway): [http://metacyc.org/META/NEW-IMAGE?object=ARG-PRO-PWY ARG-PRO-PWY]
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** '''4''' reactions found over '''4''' reactions in the full pathway
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* [[ARG-GLU-PWY]], L-arginine degradation VII (arginase 3 pathway): [http://metacyc.org/META/NEW-IMAGE?object=ARG-GLU-PWY ARG-GLU-PWY]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-4984]], urea cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-4984 PWY-4984]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-6305]], putrescine biosynthesis IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6305 PWY-6305]
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** '''3''' reactions found over '''4''' reactions in the full pathway
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* [[CITRULBIO-PWY]], L-citrulline biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=CITRULBIO-PWY CITRULBIO-PWY]
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** '''8''' reactions found over '''8''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* Wikipedia : Selenate
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* RHEA:
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* PUBCHEM:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20569 20569]
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=26473 26473]
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* LIGAND-RXN:
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* LIGAND-CPD:
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** [http://www.genome.jp/dbget-bin/www_bget?R00551 R00551]
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** [http://www.genome.jp/dbget-bin/www_bget?C05697 C05697]
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* UNIPROT:
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* CHEMSPIDER:
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** [http://www.uniprot.org/uniprot/P05089 P05089]
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** [http://www.chemspider.com/Chemical-Structure.1058.html 1058]
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** [http://www.uniprot.org/uniprot/P07824 P07824]
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* CHEBI:
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** [http://www.uniprot.org/uniprot/P40906 P40906]
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=15075 15075]
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** [http://www.uniprot.org/uniprot/Q7M0Z3 Q7M0Z3]
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* METABOLIGHTS : MTBLC15075
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** [http://www.uniprot.org/uniprot/P14012 P14012]
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{{#set: smiles=O=[Se](=O)([O-])[O-]}}
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** [http://www.uniprot.org/uniprot/P37818 P37818]
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{{#set: inchi key=InChIKey=QYHFIVBSNOWOCQ-UHFFFAOYSA-L}}
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** [http://www.uniprot.org/uniprot/P49900 P49900]
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{{#set: common name=selenate}}
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** [http://www.uniprot.org/uniprot/P39138 P39138]
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{{#set: molecular weight=142.958    }}
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** [http://www.uniprot.org/uniprot/P53608 P53608]
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{{#set: consumed by=RXN-12720}}
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** [http://www.uniprot.org/uniprot/P72703 P72703]
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** [http://www.uniprot.org/uniprot/O68051 O68051]
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** [http://www.uniprot.org/uniprot/O49046 O49046]
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** [http://www.uniprot.org/uniprot/O76895 O76895]
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** [http://www.uniprot.org/uniprot/P33280 P33280]
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** [http://www.uniprot.org/uniprot/Q10066 Q10066]
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** [http://www.uniprot.org/uniprot/P00812 P00812]
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{{#set: direction=REVERSIBLE}}
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{{#set: ec number=EC-3.5.3.1}}
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{{#set: gene associated=Tiso_gene_4415}}
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{{#set: in pathway=ARGASEDEG-PWY|PWY-6922|ARG-PRO-PWY|ARG-GLU-PWY|PWY-4984|PWY-6305|CITRULBIO-PWY}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|orthology-athaliana|annotation-in-silico_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 14:53, 21 March 2018

Reaction ARGINASE-RXN

  • direction:
    • REVERSIBLE
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 H2O[c] + 1 L-arginine[c] <=> 1 urea[c] + 1 L-ornithine[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • ARGASEDEG-PWY, L-arginine degradation I (arginase pathway): ARGASEDEG-PWY
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-6922, L-Nδ-acetylornithine biosynthesis: PWY-6922
    • 6 reactions found over 7 reactions in the full pathway
  • ARG-PRO-PWY, L-arginine degradation VI (arginase 2 pathway): ARG-PRO-PWY
    • 4 reactions found over 4 reactions in the full pathway
  • ARG-GLU-PWY, L-arginine degradation VII (arginase 3 pathway): ARG-GLU-PWY
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-4984, urea cycle: PWY-4984
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-6305, putrescine biosynthesis IV: PWY-6305
    • 3 reactions found over 4 reactions in the full pathway
  • CITRULBIO-PWY, L-citrulline biosynthesis: CITRULBIO-PWY
    • 8 reactions found over 8 reactions in the full pathway

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=SELENATE&oldid=30949"