Difference between revisions of "CPD-11763"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-646 RXN-646] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/3.5....")
(Created page with "Category:Gene == Gene Tiso_gene_13465 == * right end position: ** 5706 * transcription direction: ** POSITIVE * left end position: ** 3731 * centisome position: ** 59.4771...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-646 RXN-646] ==
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== Gene Tiso_gene_13465 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 5706
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* ec number:
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* transcription direction:
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** [http://enzyme.expasy.org/EC/3.5.1.107 EC-3.5.1.107]
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** POSITIVE
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* left end position:
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** 3731
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* centisome position:
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** 59.477127   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[RXN0-6359]]
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** 1 [[WATER]][c] '''+''' 1 [[MALEAMATE]][c] '''=>''' 1 [[MALEATE]][c] '''+''' 1 [[AMMONIUM]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 H2O[c] '''+''' 1 maleamate[c] '''=>''' 1 maleate[c] '''+''' 1 ammonium[c]
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* Reaction: [[THIOSULFATE-SULFURTRANSFERASE-RXN]]
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** Source: [[annotation-in-silico_annotation]]
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== Genes associated with this reaction  ==
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*** Assignment: ec-number
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Genes have been associated with this reaction based on different elements listed below.
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== Pathways associated ==
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* [[Tiso_gene_14341]]
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* [[PWY-5350]]
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[esiliculosus]]
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== Pathways  ==
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* [[PWY-6993]], nicotine degradation II (pyrrolidine pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6993 PWY-6993]
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** '''2''' reactions found over '''11''' reactions in the full pathway
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* [[PWY-722]], nicotinate degradation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-722 PWY-722]
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** '''1''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-5033]], nicotinate degradation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5033 PWY-5033]
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** '''1''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-7128]], nicotine degradation III (VPP pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7128 PWY-7128]
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** '''1''' reactions found over '''10''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=5706}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27385 27385]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=3731}}
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** [http://www.genome.jp/dbget-bin/www_bget?R03540 R03540]
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{{#set: centisome position=59.477127    }}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: reaction associated=RXN0-6359|THIOSULFATE-SULFURTRANSFERASE-RXN}}
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{{#set: ec number=EC-3.5.1.107}}
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{{#set: pathway associated=PWY-5350}}
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{{#set: gene associated=Tiso_gene_14341}}
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{{#set: in pathway=PWY-6993|PWY-722|PWY-5033|PWY-7128}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction source=orthology-athaliana|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph}}
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Revision as of 14:54, 21 March 2018

Gene Tiso_gene_13465

  • right end position:
    • 5706
  • transcription direction:
    • POSITIVE
  • left end position:
    • 3731
  • centisome position:
    • 59.477127
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=CPD-11763&oldid=31082"