Difference between revisions of "Tiso gene 4493"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5940 PWY-5940] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-201174 TAX-...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-15829 RXN-15829] == * direction: ** LEFT-TO-RIGHT * common name: ** probable_mitochondrial-proc...")
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5940 PWY-5940] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-15829 RXN-15829] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-201174 TAX-201174]
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** LEFT-TO-RIGHT
 
* common name:
 
* common name:
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** streptomycin biosynthesis
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** probable_mitochondrial-processingpeptidasesubunitbeta
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** cytochrome_b6-fcomplexiron-sulfurchloroplastic
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** ubiquinol-cytochrome_c_reductase
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* ec number:
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** [http://enzyme.expasy.org/EC/1.10.2.2 EC-1.10.2.2]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''2''' reactions found over '''18''' reactions in the full pathway
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* With identifiers:
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* [[MYO-INOSITOL-2-DEHYDROGENASE-RXN]]
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** 1 [[Ubiquinones]][c] '''+''' 2 [[Reduced-CycA1-cytochromes]][e] '''+''' 4 [[PROTON]][c] '''=>''' 1 [[Ubiquinols]][c] '''+''' 2 [[PROTON]][e] '''+''' 2 [[Oxidized-CycA1-cytochromes]][e]
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** 1 associated gene(s):
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* With common name(s):
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*** [[Tiso_gene_17306]]
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** 1 a ubiquinone[c] '''+''' 2 a reduced CycA1 cytochrome[e] '''+''' 4 H+[c] '''=>''' 1 an ubiquinol[c] '''+''' 2 H+[e] '''+''' 2 an oxidized CycA1 cytochrome[e]
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** 1 reconstruction source(s) associated:
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*** [[orthology-esiliculosus]]
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== Genes associated with this reaction  ==
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* [[PHOSPHOGLUCMUT-RXN]]
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Genes have been associated with this reaction based on different elements listed below.
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** 2 associated gene(s):
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* Gene: [[Tiso_gene_7235]]
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*** [[Tiso_gene_13477]]
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** Source: [[orthology-esiliculosus]]
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*** [[Tiso_gene_4816]]
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* Gene: [[Tiso_gene_9627]]
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** 3 reconstruction source(s) associated:
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** Source: [[annotation-in-silico_annotation]]
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*** [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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*** [[manual-primary_network]]
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** Source: [[annotation-experimental_annotation]]
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*** [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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== Reaction(s) not found ==
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* Gene: [[Tiso_gene_4973]]
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* [http://metacyc.org/META/NEW-IMAGE?object=2.1.4.2-RXN 2.1.4.2-RXN]
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** Source: [[orthology-esiliculosus]]
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* [http://metacyc.org/META/NEW-IMAGE?object=2.4.2.27-RXN 2.4.2.27-RXN]
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* Gene: [[Tiso_gene_18330]]
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* [http://metacyc.org/META/NEW-IMAGE?object=2.6.1.50-RXN 2.6.1.50-RXN]
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** Source: [[annotation-in-silico_annotation]]
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* [http://metacyc.org/META/NEW-IMAGE?object=2.6.1.56-RXN 2.6.1.56-RXN]
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*** Assignment: AUTOMATED-NAME-MATCH
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* [http://metacyc.org/META/NEW-IMAGE?object=2.7.7.33-RXN 2.7.7.33-RXN]
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* Gene: [[Tiso_gene_15926]]
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* [http://metacyc.org/META/NEW-IMAGE?object=3.1.3.40-RXN 3.1.3.40-RXN]
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** Source: [[annotation-in-silico_annotation]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11097 RXN-11097]
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*** Assignment: EC-NUMBER
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11098 RXN-11098]
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== Pathways  ==
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11099 RXN-11099]
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* [[PWY-6692]], Fe(II) oxidation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6692 PWY-6692]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9467 RXN-9467]
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** '''3''' reactions found over '''6''' reactions in the full pathway
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9469 RXN-9469]
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== Reconstruction information  ==
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9470 RXN-9470]
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* Category: [[orthology]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9471 RXN-9471]
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** Source: [[orthology-esiliculosus]]
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* [http://metacyc.org/META/NEW-IMAGE?object=SCYLLO-INOSAMINE-KINASE-RXN SCYLLO-INOSAMINE-KINASE-RXN]
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*** Tool: [[pantograph]]
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* [http://metacyc.org/META/NEW-IMAGE?object=STREPTOMYCIN-6-KINASE-RXN STREPTOMYCIN-6-KINASE-RXN]
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* Category: [[annotation]]
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* [http://metacyc.org/META/NEW-IMAGE?object=STREPTOMYCIN-6-PHOSPHATASE-RXN STREPTOMYCIN-6-PHOSPHATASE-RXN]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* LIGAND-MAP:
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{{#set: direction=LEFT-TO-RIGHT}}
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** [http://www.genome.jp/dbget-bin/www_bget?map00521 map00521]
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{{#set: common name=probable_mitochondrial-processingpeptidasesubunitbeta}}
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{{#set: taxonomic range=TAX-201174}}
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{{#set: common name=cytochrome_b6-fcomplexiron-sulfurchloroplastic}}
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{{#set: common name=streptomycin biosynthesis}}
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{{#set: common name=ubiquinol-cytochrome_c_reductase}}
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{{#set: reaction found=2}}
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{{#set: ec number=EC-1.10.2.2}}
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{{#set: total reaction=18}}
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{{#set: gene associated=Tiso_gene_7235|Tiso_gene_9627|Tiso_gene_4973|Tiso_gene_18330|Tiso_gene_15926}}
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{{#set: completion rate=11.0}}
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{{#set: in pathway=PWY-6692}}
 +
{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 14:58, 21 March 2018

Reaction RXN-15829

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • probable_mitochondrial-processingpeptidasesubunitbeta
    • cytochrome_b6-fcomplexiron-sulfurchloroplastic
    • ubiquinol-cytochrome_c_reductase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6692, Fe(II) oxidation: PWY-6692
    • 3 reactions found over 6 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_4493&oldid=31601"