Difference between revisions of "Tiso gene 1389"
From metabolic_network
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-10780 RXN-10780] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/...") |
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ALCOHOL-DEHYDROG-RXN ALCOHOL-DEHYDROG-RXN] == * direction: ** REVERSIBLE * common name: ** polyketi...") |
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[[Category:Reaction]] | [[Category:Reaction]] | ||
− | == Reaction [http://metacyc.org/META/NEW-IMAGE?object= | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ALCOHOL-DEHYDROG-RXN ALCOHOL-DEHYDROG-RXN] == |
* direction: | * direction: | ||
− | ** | + | ** REVERSIBLE |
+ | * common name: | ||
+ | ** polyketide_synthase | ||
+ | ** ORF | ||
* ec number: | * ec number: | ||
− | ** [http://enzyme.expasy.org/EC/1. | + | ** [http://enzyme.expasy.org/EC/1.1.1.1 EC-1.1.1.1] |
* Synonym(s): | * Synonym(s): | ||
== Reaction Formula == | == Reaction Formula == | ||
* With identifiers: | * With identifiers: | ||
− | ** 1 [[NAD]][c] '''+''' 1 [[ | + | ** 1 [[NAD]][c] '''+''' 1 [[ETOH]][c] '''<=>''' 1 [[ACETALD]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c] |
* With common name(s): | * With common name(s): | ||
− | ** 1 NAD+[c] '''+''' 1 | + | ** 1 NAD+[c] '''+''' 1 ethanol[c] '''<=>''' 1 acetaldehyde[c] '''+''' 1 NADH[c] '''+''' 1 H+[c] |
== Genes associated with this reaction == | == Genes associated with this reaction == | ||
Genes have been associated with this reaction based on different elements listed below. | Genes have been associated with this reaction based on different elements listed below. | ||
− | * [[ | + | * Gene: [[Tiso_gene_18459]] |
− | ** [[ | + | ** Source: [[orthology-synechocystis]] |
− | ** [[ | + | * Gene: [[Tiso_gene_7649]] |
− | * [[ | + | ** Source: [[annotation-in-silico_annotation]] |
− | ** [[ | + | *** Assignment: EC-NUMBER |
+ | * Gene: [[Tiso_gene_6563]] | ||
+ | ** Source: [[annotation-in-silico_annotation]] | ||
+ | *** Assignment: EC-NUMBER | ||
+ | * Gene: [[Tiso_gene_5424]] | ||
+ | ** Source: [[annotation-in-silico_annotation]] | ||
+ | *** Assignment: EC-NUMBER | ||
+ | * Gene: [[Tiso_gene_5425]] | ||
+ | ** Source: [[annotation-in-silico_annotation]] | ||
+ | *** Assignment: EC-NUMBER | ||
+ | * Gene: [[Tiso_gene_6562]] | ||
+ | ** Source: [[annotation-in-silico_annotation]] | ||
+ | *** Assignment: EC-NUMBER | ||
== Pathways == | == Pathways == | ||
− | * [[PWY- | + | * [[PWY66-21]], ethanol degradation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-21 PWY66-21] |
− | ** '''6''' reactions found over ''' | + | ** '''3''' reactions found over '''3''' reactions in the full pathway |
+ | * [[ETOH-ACETYLCOA-ANA-PWY]], ethanol degradation I: [http://metacyc.org/META/NEW-IMAGE?object=ETOH-ACETYLCOA-ANA-PWY ETOH-ACETYLCOA-ANA-PWY] | ||
+ | ** '''2''' reactions found over '''2''' reactions in the full pathway | ||
+ | * [[PWY-7118]], chitin degradation to ethanol: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7118 PWY-7118] | ||
+ | ** '''4''' reactions found over '''6''' reactions in the full pathway | ||
+ | * [[FERMENTATION-PWY]], mixed acid fermentation: [http://metacyc.org/META/NEW-IMAGE?object=FERMENTATION-PWY FERMENTATION-PWY] | ||
+ | ** '''9''' reactions found over '''16''' reactions in the full pathway | ||
+ | * [[PWY-6333]], acetaldehyde biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6333 PWY-6333] | ||
+ | ** '''1''' reactions found over '''1''' reactions in the full pathway | ||
+ | * [[PWY-5486]], pyruvate fermentation to ethanol II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5486 PWY-5486] | ||
+ | ** '''1''' reactions found over '''2''' reactions in the full pathway | ||
+ | * [[P161-PWY]], acetylene degradation: [http://metacyc.org/META/NEW-IMAGE?object=P161-PWY P161-PWY] | ||
+ | ** '''2''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[P122-PWY]], heterolactic fermentation: [http://metacyc.org/META/NEW-IMAGE?object=P122-PWY P122-PWY] | ||
+ | ** '''14''' reactions found over '''18''' reactions in the full pathway | ||
+ | * [[PWY4LZ-257]], superpathway of fermentation (Chlamydomonas reinhardtii): [http://metacyc.org/META/NEW-IMAGE?object=PWY4LZ-257 PWY4LZ-257] | ||
+ | ** '''5''' reactions found over '''13''' reactions in the full pathway | ||
+ | * [[PWY-5480]], pyruvate fermentation to ethanol I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5480 PWY-5480] | ||
+ | ** '''2''' reactions found over '''3''' reactions in the full pathway | ||
+ | * [[PWY-6587]], pyruvate fermentation to ethanol III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6587 PWY-6587] | ||
+ | ** '''2''' reactions found over '''3''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
* Category: [[orthology]] | * Category: [[orthology]] | ||
− | ** Source: [[orthology- | + | ** Source: [[orthology-synechocystis]] |
− | + | ||
− | + | ||
*** Tool: [[pantograph]] | *** Tool: [[pantograph]] | ||
+ | * Category: [[annotation]] | ||
+ | ** Source: [[annotation-in-silico_annotation]] | ||
+ | *** Tool: [[pathwaytools]] | ||
== External links == | == External links == | ||
* RHEA: | * RHEA: | ||
− | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id= | + | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25290 25290] |
* LIGAND-RXN: | * LIGAND-RXN: | ||
− | ** [http://www.genome.jp/dbget-bin/www_bget? | + | ** [http://www.genome.jp/dbget-bin/www_bget?R00754 R00754] |
− | {{#set: direction= | + | {{#set: direction=REVERSIBLE}} |
− | {{#set: ec number=EC-1. | + | {{#set: common name=polyketide_synthase}} |
− | {{#set: gene associated= | + | {{#set: common name=ORF}} |
− | {{#set: in pathway=PWY- | + | {{#set: ec number=EC-1.1.1.1}} |
− | {{#set: reconstruction category=orthology}} | + | {{#set: gene associated=Tiso_gene_18459|Tiso_gene_7649|Tiso_gene_6563|Tiso_gene_5424|Tiso_gene_5425|Tiso_gene_6562}} |
− | {{#set: reconstruction source= | + | {{#set: in pathway=PWY66-21|ETOH-ACETYLCOA-ANA-PWY|PWY-7118|FERMENTATION-PWY|PWY-6333|PWY-5486|P161-PWY|P122-PWY|PWY4LZ-257|PWY-5480|PWY-6587}} |
− | {{#set: reconstruction tool=pantograph}} | + | {{#set: reconstruction category=orthology|annotation}} |
+ | {{#set: reconstruction source=annotation-in-silico_annotation|orthology-synechocystis}} | ||
+ | {{#set: reconstruction tool=pantograph|pathwaytools}} |
Revision as of 14:59, 21 March 2018
Contents
Reaction ALCOHOL-DEHYDROG-RXN
- direction:
- REVERSIBLE
- common name:
- polyketide_synthase
- ORF
- ec number:
- Synonym(s):
Reaction Formula
- With identifiers:
- With common name(s):
- 1 NAD+[c] + 1 ethanol[c] <=> 1 acetaldehyde[c] + 1 NADH[c] + 1 H+[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: Tiso_gene_18459
- Source: orthology-synechocystis
- Gene: Tiso_gene_7649
- Source: annotation-in-silico_annotation
- Assignment: EC-NUMBER
- Source: annotation-in-silico_annotation
- Gene: Tiso_gene_6563
- Source: annotation-in-silico_annotation
- Assignment: EC-NUMBER
- Source: annotation-in-silico_annotation
- Gene: Tiso_gene_5424
- Source: annotation-in-silico_annotation
- Assignment: EC-NUMBER
- Source: annotation-in-silico_annotation
- Gene: Tiso_gene_5425
- Source: annotation-in-silico_annotation
- Assignment: EC-NUMBER
- Source: annotation-in-silico_annotation
- Gene: Tiso_gene_6562
- Source: annotation-in-silico_annotation
- Assignment: EC-NUMBER
- Source: annotation-in-silico_annotation
Pathways
- PWY66-21, ethanol degradation II: PWY66-21
- 3 reactions found over 3 reactions in the full pathway
- ETOH-ACETYLCOA-ANA-PWY, ethanol degradation I: ETOH-ACETYLCOA-ANA-PWY
- 2 reactions found over 2 reactions in the full pathway
- PWY-7118, chitin degradation to ethanol: PWY-7118
- 4 reactions found over 6 reactions in the full pathway
- FERMENTATION-PWY, mixed acid fermentation: FERMENTATION-PWY
- 9 reactions found over 16 reactions in the full pathway
- PWY-6333, acetaldehyde biosynthesis I: PWY-6333
- 1 reactions found over 1 reactions in the full pathway
- PWY-5486, pyruvate fermentation to ethanol II: PWY-5486
- 1 reactions found over 2 reactions in the full pathway
- P161-PWY, acetylene degradation: P161-PWY
- 2 reactions found over 5 reactions in the full pathway
- P122-PWY, heterolactic fermentation: P122-PWY
- 14 reactions found over 18 reactions in the full pathway
- PWY4LZ-257, superpathway of fermentation (Chlamydomonas reinhardtii): PWY4LZ-257
- 5 reactions found over 13 reactions in the full pathway
- PWY-5480, pyruvate fermentation to ethanol I: PWY-5480
- 2 reactions found over 3 reactions in the full pathway
- PWY-6587, pyruvate fermentation to ethanol III: PWY-6587
- 2 reactions found over 3 reactions in the full pathway
Reconstruction information
- Category: orthology
- Source: orthology-synechocystis
- Tool: pantograph
- Source: orthology-synechocystis
- Category: annotation
- Source: annotation-in-silico_annotation
- Tool: pathwaytools
- Source: annotation-in-silico_annotation
External links