Difference between revisions of "Tiso gene 575"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=GLUCONEO-PWY GLUCONEO-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-475...")
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=GERANYL-PP GERANYL-PP] == * smiles: ** CC(=CCCC(=CCOP([O-])(OP(=O)([O-])[O-])=O)C)C * common na...")
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[[Category:Pathway]]
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[[Category:Metabolite]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=GLUCONEO-PWY GLUCONEO-PWY] ==
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=GERANYL-PP GERANYL-PP] ==
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* taxonomic range:
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* smiles:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TAX-4751]
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** CC(=CCCC(=CCOP([O-])(OP(=O)([O-])[O-])=O)C)C
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-33090 TAX-33090]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-2157]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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* common name:
 
* common name:
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** gluconeogenesis I
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** geranyl diphosphate
 +
* inchi key:
 +
** InChIKey=GVVPGTZRZFNKDS-JXMROGBWSA-K
 +
* molecular weight:
 +
** 311.188   
 
* Synonym(s):
 
* Synonym(s):
 +
** geranyl-diphosphate
 +
** geranyl-pyrophosphate
 +
** GPP
 +
** geranyl-PP
 +
** geranyl pyrophosphate
 +
** ω,E-geranyl diphosphate
  
−
== Reaction(s) found ==
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== Reaction(s) known to consume the compound ==
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'''13''' reactions found over '''13''' reactions in the full pathway
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* [[FPPSYN-RXN]]
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* [[1.1.1.39-RXN]]
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* [[TRANS-OCTAPRENYLTRANSTRANSFERASE-RXN]]
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** 3 associated gene(s):
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== Reaction(s) known to produce the compound ==
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*** [[Tiso_gene_12896]]
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* [[GPPS]]
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*** [[Tiso_gene_6675]]
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== Reaction(s) of unknown directionality ==
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*** [[Tiso_gene_12200]]
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* [[GPPSYN-RXN]]
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** 3 reconstruction source(s) associated:
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−
*** [[annotation-experimental_annotation]]
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−
*** [[annotation-in-silico_annotation]]
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*** [[orthology-esiliculosus]]
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* [[2PGADEHYDRAT-RXN]]
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** 4 associated gene(s):
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*** [[Tiso_gene_14718]]
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*** [[Tiso_gene_8720]]
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*** [[Tiso_gene_5619]]
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*** [[Tiso_gene_13317]]
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** 7 reconstruction source(s) associated:
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−
*** [[annotation-experimental_annotation]]
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−
*** [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[3PGAREARR-RXN]]
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−
** 16 associated gene(s):
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−
*** [[Tiso_gene_2667]]
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−
*** [[Tiso_gene_9922]]
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−
*** [[Tiso_gene_15048]]
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−
*** [[Tiso_gene_2841]]
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*** [[Tiso_gene_14530]]
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*** [[Tiso_gene_16754]]
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*** [[Tiso_gene_2365]]
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*** [[Tiso_gene_16271]]
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−
*** [[Tiso_gene_5468]]
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*** [[Tiso_gene_20311]]
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*** [[Tiso_gene_14664]]
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*** [[Tiso_gene_15391]]
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*** [[Tiso_gene_14212]]
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*** [[Tiso_gene_10516]]
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*** [[Tiso_gene_9923]]
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*** [[Tiso_gene_7201]]
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** 7 reconstruction source(s) associated:
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−
*** [[annotation-experimental_annotation]]
+
−
*** [[orthology-esiliculosus]]
+
−
*** [[annotation-in-silico_annotation]]
+
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*** [[orthology-athaliana]]
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−
*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[F16ALDOLASE-RXN]]
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** 6 associated gene(s):
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*** [[Tiso_gene_65]]
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*** [[Tiso_gene_9119]]
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*** [[Tiso_gene_9179]]
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*** [[Tiso_gene_12272]]
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*** [[Tiso_gene_14568]]
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*** [[Tiso_gene_9118]]
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** 5 reconstruction source(s) associated:
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−
*** [[annotation-in-silico_annotation]]
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−
*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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*** [[orthology-esiliculosus]]
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*** [[annotation-experimental_annotation]]
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* [[F16BDEPHOS-RXN]]
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** 7 associated gene(s):
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*** [[Tiso_gene_16502]]
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*** [[Tiso_gene_8226]]
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*** [[Tiso_gene_9435]]
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*** [[Tiso_gene_4904]]
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*** [[Tiso_gene_3483]]
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*** [[Tiso_gene_15398]]
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*** [[Tiso_gene_4905]]
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** 6 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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−
*** [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[GAPOXNPHOSPHN-RXN]]
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** 5 associated gene(s):
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*** [[Tiso_gene_20000]]
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*** [[Tiso_gene_6766]]
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*** [[Tiso_gene_10646]]
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*** [[Tiso_gene_3344]]
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*** [[Tiso_gene_235]]
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** 7 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[MALATE-DEH-RXN]]
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** 2 associated gene(s):
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*** [[Tiso_gene_1990]]
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*** [[Tiso_gene_2323]]
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** 7 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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−
*** [[orthology-esiliculosus]]
+
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*** [[annotation-in-silico_annotation]]
+
−
*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[MALIC-NADP-RXN]]
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** 3 associated gene(s):
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*** [[Tiso_gene_6675]]
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*** [[Tiso_gene_12896]]
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*** [[Tiso_gene_12200]]
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** 3 reconstruction source(s) associated:
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*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[orthology-esiliculosus]]
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* [[PEPCARBOXYKIN-RXN]]
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** 1 associated gene(s):
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*** [[Tiso_gene_19475]]
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** 5 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[orthology-athaliana]]
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*** [[orthology-creinhardtii]]
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*** [[manual-primary_network]]
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*** [[orthology-esiliculosus]]
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* [[PEPSYNTH-RXN]]
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** 0 associated gene:
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** 2 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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*** [[annotation-experimental_annotation]]
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* [[PGLUCISOM-RXN]]
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** 1 associated gene(s):
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*** [[Tiso_gene_19480]]
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** 3 reconstruction source(s) associated:
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*** [[annotation-experimental_annotation]]
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*** [[annotation-in-silico_annotation]]
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*** [[orthology-esiliculosus]]
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* [[PHOSGLYPHOS-RXN]]
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** 6 associated gene(s):
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*** [[Tiso_gene_3527]]
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*** [[Tiso_gene_18263]]
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*** [[Tiso_gene_12104]]
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*** [[Tiso_gene_3526]]
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*** [[Tiso_gene_14642]]
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*** [[Tiso_gene_18264]]
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** 7 reconstruction source(s) associated:
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−
*** [[annotation-experimental_annotation]]
+
−
*** [[orthology-esiliculosus]]
+
−
*** [[annotation-in-silico_annotation]]
+
−
*** [[orthology-athaliana]]
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*** [[orthology-synechocystis]]
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*** [[manual-primary_network]]
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*** [[orthology-creinhardtii]]
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* [[TRIOSEPISOMERIZATION-RXN]]
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** 4 associated gene(s):
+
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*** [[Tiso_gene_20000]]
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*** [[Tiso_gene_19961]]
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*** [[Tiso_gene_10646]]
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*** [[Tiso_gene_19962]]
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** 7 reconstruction source(s) associated:
+
−
*** [[annotation-experimental_annotation]]
+
−
*** [[orthology-esiliculosus]]
+
−
*** [[annotation-in-silico_annotation]]
+
−
*** [[orthology-athaliana]]
+
−
*** [[orthology-synechocystis]]
+
−
*** [[manual-primary_network]]
+
−
*** [[orthology-creinhardtii]]
+
−
== Reaction(s) not found ==
+
 
== External links  ==
 
== External links  ==
−
* ECOCYC:
+
* BIGG : grdp
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** [http://metacyc.org/ECOLI/NEW-IMAGE?object=GLUCONEO-PWY GLUCONEO-PWY]
+
* PUBCHEM:
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* ARACYC:
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=19379894 19379894]
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** [http://metacyc.org/ARA/NEW-IMAGE?object=GLUCONEO-PWY GLUCONEO-PWY]
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* KNAPSACK : C00000846
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{{#set: taxonomic range=TAX-4751}}
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* HMDB : HMDB01285
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{{#set: taxonomic range=TAX-33090}}
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* LIGAND-CPD:
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{{#set: taxonomic range=TAX-2157}}
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** [http://www.genome.jp/dbget-bin/www_bget?C00341 C00341]
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{{#set: taxonomic range=TAX-2}}
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* CHEMSPIDER:
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{{#set: common name=gluconeogenesis I}}
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** [http://www.chemspider.com/Chemical-Structure.14211068.html 14211068]
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{{#set: reaction found=13}}
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* CHEBI:
−
{{#set: total reaction=13}}
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=58057 58057]
−
{{#set: completion rate=100.0}}
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* METABOLIGHTS : MTBLC58057
 +
{{#set: smiles=CC(=CCCC(=CCOP([O-])(OP(=O)([O-])[O-])=O)C)C}}
 +
{{#set: common name=geranyl diphosphate}}
 +
{{#set: inchi key=InChIKey=GVVPGTZRZFNKDS-JXMROGBWSA-K}}
 +
{{#set: molecular weight=311.188    }}
 +
{{#set: common name=geranyl-diphosphate|geranyl-pyrophosphate|GPP|geranyl-PP|geranyl pyrophosphate|ω,E-geranyl diphosphate}}
 +
{{#set: consumed by=FPPSYN-RXN|TRANS-OCTAPRENYLTRANSTRANSFERASE-RXN}}
 +
{{#set: produced by=GPPS}}
 +
{{#set: reversible reaction associated=GPPSYN-RXN}}

Revision as of 14:59, 21 March 2018

Metabolite GERANYL-PP

  • smiles:
    • CC(=CCCC(=CCOP([O-])(OP(=O)([O-])[O-])=O)C)C
  • common name:
    • geranyl diphosphate
  • inchi key:
    • InChIKey=GVVPGTZRZFNKDS-JXMROGBWSA-K
  • molecular weight:
    • 311.188
  • Synonym(s):
    • geranyl-diphosphate
    • geranyl-pyrophosphate
    • GPP
    • geranyl-PP
    • geranyl pyrophosphate
    • ω,E-geranyl diphosphate

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

External links

  • BIGG : grdp
  • PUBCHEM:
  • KNAPSACK : C00000846
  • HMDB : HMDB01285
  • LIGAND-CPD:
  • CHEMSPIDER:
  • CHEBI:
  • METABOLIGHTS : MTBLC58057
"CC(=CCCC(=CCOP([O-])(OP(=O)([O-])[O-])=O)C)C" cannot be used as a page name in this wiki.




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