Difference between revisions of "Tiso gene 17311"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-2601 RXN0-2601] == * direction: ** LEFT-TO-RIGHT * common name: ** formamidopyrimidine-dna_gly...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY66-428 PWY66-428] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-40674 TAX...")
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[[Category:Reaction]]
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[[Category:Pathway]]
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-2601 RXN0-2601] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY66-428 PWY66-428] ==
* direction:
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* taxonomic range:
** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-40674 TAX-40674]
 
* common name:
 
* common name:
** formamidopyrimidine-dna_glycosylase
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** L-threonine degradation V
** dna_glycosylase
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** dna-(apurinic_or_apyrimidinic_site)_lyase
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* ec number:
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** [http://enzyme.expasy.org/EC/4.2.99.18 EC-4.2.99.18]
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* Synonym(s):
 
* Synonym(s):
  
== Reaction Formula ==
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== Reaction(s) found ==
* With identifiers:
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'''1''' reactions found over '''2''' reactions in the full pathway
** 1 [[Damaged-DNA-Pyrimidine]][c] '''=>''' 1 [[DNA-containing-a-Apyrimidinic-Sites]][c]
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* [[THREDEHYD-RXN]]
* With common name(s):
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** 3 associated gene(s):
** 1 a damaged DNA pyrimidine[c] '''=>''' 1 an apyrimidinic site in DNA[c]
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*** [[Tiso_gene_12535]]
 
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*** [[Tiso_gene_17207]]
== Genes associated with this reaction  ==
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*** [[Tiso_gene_8525]]
Genes have been associated with this reaction based on different elements listed below.
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** 7 reconstruction source(s) associated:
* [[Tiso_gene_16492]]
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*** [[annotation-experimental_annotation]]
** IN-SILICO_ANNOTATION
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*** [[orthology-esiliculosus]]
***AUTOMATED-NAME-MATCH
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*** [[annotation-in-silico_annotation]]
* [[Tiso_gene_6558]]
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*** [[orthology-athaliana]]
** IN-SILICO_ANNOTATION
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*** [[orthology-synechocystis]]
***EC-NUMBER
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*** [[manual-primary_network]]
* [[Tiso_gene_14609]]
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*** [[orthology-creinhardtii]]
** IN-SILICO_ANNOTATION
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== Reaction(s) not found ==
***EC-NUMBER
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-7790 RXN-7790]
* [[Tiso_gene_17380]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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** EXPERIMENTAL_ANNOTATION
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***AUTOMATED-NAME-MATCH
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* [[Tiso_gene_19077]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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* [[Tiso_gene_16493]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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* [[Tiso_gene_1280]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_11590]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_19078]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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** [[pantograph]]-[[esiliculosus]]
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== Pathways  ==
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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== External links  ==
 
== External links  ==
{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: taxonomic range=TAX-40674}}
{{#set: common name=formamidopyrimidine-dna_glycosylase}}
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{{#set: common name=L-threonine degradation V}}
{{#set: common name=dna_glycosylase}}
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{{#set: reaction found=1}}
{{#set: common name=dna-(apurinic_or_apyrimidinic_site)_lyase}}
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{{#set: total reaction=2}}
{{#set: ec number=EC-4.2.99.18}}
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{{#set: completion rate=50.0}}
{{#set: gene associated=Tiso_gene_16492|Tiso_gene_6558|Tiso_gene_14609|Tiso_gene_17380|Tiso_gene_19077|Tiso_gene_16493|Tiso_gene_1280|Tiso_gene_11590|Tiso_gene_19078}}
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{{#set: in pathway=}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Revision as of 15:01, 21 March 2018

Pathway PWY66-428

  • taxonomic range:
  • common name:
    • L-threonine degradation V
  • Synonym(s):

Reaction(s) found

1 reactions found over 2 reactions in the full pathway

Reaction(s) not found

External links