Difference between revisions of "Tiso gene 4479"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16389 RXN-16389] == * direction: ** LEFT-TO-RIGHT * common name: ** polyketide_synthase ** long...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=P221-PWY P221-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TAX-47...")
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-16389 RXN-16389] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=P221-PWY P221-PWY] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TAX-4751]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
 
* common name:
 
* common name:
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** polyketide_synthase
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** octane oxidation
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** long_chain_acyl-_synthetase
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** acyl-_synthetase
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** ORF
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* ec number:
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** [http://enzyme.expasy.org/EC/6.2.1.3 EC-6.2.1.3]
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''2''' reactions found over '''5''' reactions in the full pathway
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** 1 [[CO-A]][c] '''+''' 1 [[16-HYDROXYPALMITATE]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[CPD-17621]][c] '''+''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c]
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* [[R222-RXN]]
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* With common name(s):
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** 0 associated gene:
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** 1 coenzyme A[c] '''+''' 1 16-hydroxypalmitate[c] '''+''' 1 ATP[c] '''=>''' 1 16-hydroxypalmitoyl-CoA[c] '''+''' 1 AMP[c] '''+''' 1 diphosphate[c]
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** 1 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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== Genes associated with this reaction  ==
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* [[R223-RXN]]
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Genes have been associated with this reaction based on different elements listed below.
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** 9 associated gene(s):
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* [[Tiso_gene_9394]]
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*** [[Tiso_gene_348]]
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** IN-SILICO_ANNOTATION
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*** [[Tiso_gene_136]]
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***EC-NUMBER
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*** [[Tiso_gene_10876]]
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** EXPERIMENTAL_ANNOTATION
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*** [[Tiso_gene_13394]]
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***EC-NUMBER
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*** [[Tiso_gene_500]]
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* [[Tiso_gene_4191]]
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*** [[Tiso_gene_7855]]
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** IN-SILICO_ANNOTATION
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*** [[Tiso_gene_4191]]
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***EC-NUMBER
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*** [[Tiso_gene_135]]
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** EXPERIMENTAL_ANNOTATION
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*** [[Tiso_gene_9394]]
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***EC-NUMBER
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** 3 reconstruction source(s) associated:
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* [[Tiso_gene_500]]
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*** [[annotation-experimental_annotation]]
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** IN-SILICO_ANNOTATION
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*** [[annotation-in-silico_annotation]]
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***EC-NUMBER
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*** [[orthology-esiliculosus]]
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* [[Tiso_gene_136]]
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== Reaction(s) not found ==
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** IN-SILICO_ANNOTATION
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* [http://metacyc.org/META/NEW-IMAGE?object=ALKANE-1-MONOOXYGENASE-RXN ALKANE-1-MONOOXYGENASE-RXN]
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***EC-NUMBER
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* [http://metacyc.org/META/NEW-IMAGE?object=R221-RXN R221-RXN]
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* [[Tiso_gene_7855]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RUBREDOXIN--NAD+-REDUCTASE-RXN RUBREDOXIN--NAD+-REDUCTASE-RXN]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_135]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_348]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_10876]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_13394]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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== Pathways  ==
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* [[PWY-321]], cutin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-321 PWY-321]
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** '''3''' reactions found over '''16''' reactions in the full pathway
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* [[PWY-6733]], sporopollenin precursors biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6733 PWY-6733]
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** '''8''' reactions found over '''18''' reactions in the full pathway
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* [[PWY-1121]], suberin monomers biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-1121 PWY-1121]
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** '''9''' reactions found over '''19''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[annotation]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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== External links  ==
 
== External links  ==
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{{#set: direction=LEFT-TO-RIGHT}}
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* UM-BBD-PWY : oct
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{{#set: common name=polyketide_synthase}}
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{{#set: taxonomic range=TAX-4751}}
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{{#set: common name=long_chain_acyl-_synthetase}}
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{{#set: taxonomic range=TAX-2}}
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{{#set: common name=acyl-_synthetase}}
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{{#set: common name=octane oxidation}}
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{{#set: common name=ORF}}
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{{#set: reaction found=2}}
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{{#set: ec number=EC-6.2.1.3}}
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{{#set: total reaction=5}}
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{{#set: gene associated=Tiso_gene_9394|Tiso_gene_4191|Tiso_gene_500|Tiso_gene_136|Tiso_gene_7855|Tiso_gene_135|Tiso_gene_348|Tiso_gene_10876|Tiso_gene_13394}}
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{{#set: completion rate=40.0}}
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{{#set: in pathway=PWY-321|PWY-6733|PWY-1121}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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Revision as of 15:01, 21 March 2018

Pathway P221-PWY

  • taxonomic range:
  • common name:
    • octane oxidation
  • Synonym(s):

Reaction(s) found

2 reactions found over 5 reactions in the full pathway

Reaction(s) not found

External links

  • UM-BBD-PWY : oct




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