Difference between revisions of "ALCOHOL-DEHYDROG-GENERIC-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PEPCARBOXYKIN-RXN PEPCARBOXYKIN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** Phosphoenol...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=HYDROXYMETHYLGLUTARYL-COA-SYNTHASE-RXN HYDROXYMETHYLGLUTARYL-COA-SYNTHASE-RXN] == * direction: ** R...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PEPCARBOXYKIN-RXN PEPCARBOXYKIN-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=HYDROXYMETHYLGLUTARYL-COA-SYNTHASE-RXN HYDROXYMETHYLGLUTARYL-COA-SYNTHASE-RXN] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
−
** Phosphoenolpyruvate carboxykinase [ATP]
+
** polyketide_synthase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/4.1.1.49 EC-4.1.1.49]
+
** [http://enzyme.expasy.org/EC/2.3.3.10 EC-2.3.3.10]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[OXALACETIC_ACID]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[PHOSPHO-ENOL-PYRUVATE]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
+
** 1 [[WATER]][c] '''+''' 1 [[ACETOACETYL-COA]][c] '''+''' 1 [[ACETYL-COA]][c] '''<=>''' 1 [[PROTON]][c] '''+''' 1 [[3-HYDROXY-3-METHYL-GLUTARYL-COA]][c] '''+''' 1 [[CO-A]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 oxaloacetate[c] '''+''' 1 ATP[c] '''=>''' 1 ADP[c] '''+''' 1 phosphoenolpyruvate[c] '''+''' 1 CO2[c]
+
** 1 H2O[c] '''+''' 1 acetoacetyl-CoA[c] '''+''' 1 acetyl-CoA[c] '''<=>''' 1 H+[c] '''+''' 1 (S)-3-hydroxy-3-methylglutaryl-CoA[c] '''+''' 1 coenzyme A[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_19475]]
+
* Gene: [[Tiso_gene_9236]]
−
** EXPERIMENTAL_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***AUTOMATED-NAME-MATCH
+
*** Assignment: EC-NUMBER
−
** [[pantograph]]-[[athaliana]]
+
* Gene: [[Tiso_gene_14303]]
−
** [[pantograph]]-[[esiliculosus]]
+
** Source: [[orthology-athaliana]]
−
** [[pantograph]]-[[creinhardtii]]
+
** Source: [[orthology-esiliculosus]]
−
** [[pantograph]]-[[creinhardtii]]
+
* Gene: [[Tiso_gene_8563]]
 +
** Source: [[orthology-esiliculosus]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-561]], superpathway of glyoxylate cycle and fatty acid degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-561 PWY-561]
+
* [[PWY66-367]], ketogenesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-367 PWY66-367]
−
** '''5''' reactions found over '''8''' reactions in the full pathway
+
** '''5''' reactions found over '''5''' reactions in the full pathway
−
* [[GLUCONEO-PWY]], gluconeogenesis I: [http://metacyc.org/META/NEW-IMAGE?object=GLUCONEO-PWY GLUCONEO-PWY]
+
* [[PWY-6174]], mevalonate pathway II (archaea): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6174 PWY-6174]
−
** '''13''' reactions found over '''13''' reactions in the full pathway
+
** '''5''' reactions found over '''7''' reactions in the full pathway
−
* [[PWY-7117]], C4 photosynthetic carbon assimilation cycle, PEPCK type: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7117 PWY-7117]
+
* [[PWY-922]], mevalonate pathway I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-922 PWY-922]
−
** '''7''' reactions found over '''10''' reactions in the full pathway
+
** '''6''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-7391]], isoprene biosynthesis II (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7391 PWY-7391]
 +
** '''6''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-7571]], ferrichrome A biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7571 PWY-7571]
 +
** '''2''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-7524]], mevalonate pathway III (archaea): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7524 PWY-7524]
 +
** '''4''' reactions found over '''8''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
 
** Source: [[orthology-athaliana]]
 
** Source: [[orthology-athaliana]]
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-creinhardtii]]
 
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
−
* Category: [[manual]]
 
−
** Source: [[manual-primary_network]]
 
 
* Category: [[annotation]]
 
* Category: [[annotation]]
−
** Source: [[annotation-experimental_annotation]]
+
** Source: [[annotation-in-silico_annotation]]
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18617 18617]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10188 10188]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00341 R00341]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01978 R01978]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P10963 P10963]
+
** [http://www.uniprot.org/uniprot/P13704 P13704]
−
** [http://www.uniprot.org/uniprot/Q9PP01 Q9PP01]
+
** [http://www.uniprot.org/uniprot/P22791 P22791]
−
** [http://www.uniprot.org/uniprot/P43923 P43923]
+
** [http://www.uniprot.org/uniprot/P54870 P54870]
−
** [http://www.uniprot.org/uniprot/P22259 P22259]
+
** [http://www.uniprot.org/uniprot/P54869 P54869]
−
** [http://www.uniprot.org/uniprot/P42066 P42066]
+
** [http://www.uniprot.org/uniprot/O51626 O51626]
−
** [http://www.uniprot.org/uniprot/P49292 P49292]
+
** [http://www.uniprot.org/uniprot/Q9CFA9 Q9CFA9]
−
** [http://www.uniprot.org/uniprot/O49547 O49547]
+
** [http://www.uniprot.org/uniprot/P17425 P17425]
−
** [http://www.uniprot.org/uniprot/Q9T074 Q9T074]
+
** [http://www.uniprot.org/uniprot/Q7LZE7 Q7LZE7]
−
** [http://www.uniprot.org/uniprot/Q39294 Q39294]
+
** [http://www.uniprot.org/uniprot/Q01581 Q01581]
−
** [http://www.uniprot.org/uniprot/Q9RC49 Q9RC49]
+
** [http://www.uniprot.org/uniprot/P54961 P54961]
−
{{#set: direction=LEFT-TO-RIGHT}}
+
** [http://www.uniprot.org/uniprot/P54839 P54839]
−
{{#set: common name=Phosphoenolpyruvate carboxykinase [ATP]}}
+
** [http://www.uniprot.org/uniprot/P54874 P54874]
−
{{#set: ec number=EC-4.1.1.49}}
+
** [http://www.uniprot.org/uniprot/P54868 P54868]
−
{{#set: gene associated=Tiso_gene_19475}}
+
** [http://www.uniprot.org/uniprot/P54873 P54873]
−
{{#set: in pathway=PWY-561|GLUCONEO-PWY|PWY-7117}}
+
** [http://www.uniprot.org/uniprot/P93773 P93773]
−
{{#set: reconstruction category=orthology|manual|annotation}}
+
{{#set: direction=REVERSIBLE}}
−
{{#set: reconstruction source=annotation-experimental_annotation|manual-primary_network|orthology-creinhardtii|orthology-athaliana|orthology-esiliculosus}}
+
{{#set: common name=polyketide_synthase}}
 +
{{#set: ec number=EC-2.3.3.10}}
 +
{{#set: gene associated=Tiso_gene_9236|Tiso_gene_14303|Tiso_gene_8563}}
 +
{{#set: in pathway=PWY66-367|PWY-6174|PWY-922|PWY-7391|PWY-7571|PWY-7524}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=orthology-athaliana|annotation-in-silico_annotation|orthology-esiliculosus}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 15:01, 21 March 2018

Reaction HYDROXYMETHYLGLUTARYL-COA-SYNTHASE-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • polyketide_synthase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY66-367, ketogenesis: PWY66-367
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-6174, mevalonate pathway II (archaea): PWY-6174
    • 5 reactions found over 7 reactions in the full pathway
  • PWY-922, mevalonate pathway I: PWY-922
    • 6 reactions found over 7 reactions in the full pathway
  • PWY-7391, isoprene biosynthesis II (engineered): PWY-7391
    • 6 reactions found over 8 reactions in the full pathway
  • PWY-7571, ferrichrome A biosynthesis: PWY-7571
    • 2 reactions found over 5 reactions in the full pathway
  • PWY-7524, mevalonate pathway III (archaea): PWY-7524
    • 4 reactions found over 8 reactions in the full pathway

Reconstruction information

External links





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