Difference between revisions of "5Z-tetradec-5-enoyl-ACPs"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2TRANSKETO-RXN 2TRANSKETO-RXN] == * direction: ** REVERSIBLE * common name: ** transketolase * ec n...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PROTEIN-ARGININE-DEIMINASE-RXN PROTEIN-ARGININE-DEIMINASE-RXN] == * direction: ** LEFT-TO-RIGHT * c...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2TRANSKETO-RXN 2TRANSKETO-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PROTEIN-ARGININE-DEIMINASE-RXN PROTEIN-ARGININE-DEIMINASE-RXN] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** transketolase
+
** peptidylarginine_deiminase_(modular_protein)
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.2.1.1 EC-2.2.1.1]
+
** [http://enzyme.expasy.org/EC/3.5.3.15 EC-3.5.3.15]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[XYLULOSE-5-PHOSPHATE]][c] '''+''' 1 [[ERYTHROSE-4P]][c] '''<=>''' 1 [[FRUCTOSE-6P]][c] '''+''' 1 [[GAP]][c]
+
** 1 [[Protein-L-Arginines]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[PROTEIN-L-CITRULLINE]][c] '''+''' 1 [[AMMONIUM]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 D-xylulose 5-phosphate[c] '''+''' 1 D-erythrose 4-phosphate[c] '''<=>''' 1 &beta;-D-fructofuranose 6-phosphate[c] '''+''' 1 D-glyceraldehyde 3-phosphate[c]
+
** 1 a [protein]-L-arginine[c] '''+''' 1 H2O[c] '''=>''' 1 a [protein]-L-citrulline[c] '''+''' 1 ammonium[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_11559]]
+
* Gene: [[Tiso_gene_16344]]
−
** EXPERIMENTAL_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
* [[Tiso_gene_5008]]
+
* Gene: [[Tiso_gene_19262]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[athaliana]]
+
−
** [[pantograph]]-[[athaliana]]
+
−
** [[pantograph]]-[[creinhardtii]]
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-6901]], superpathway of glucose and xylose degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6901 PWY-6901]
+
* [[PWY-4921]], protein citrullination: [http://metacyc.org/META/NEW-IMAGE?object=PWY-4921 PWY-4921]
−
** '''8''' reactions found over '''12''' reactions in the full pathway
+
** '''1''' reactions found over '''1''' reactions in the full pathway
−
* [[CALVIN-PWY]], Calvin-Benson-Bassham cycle: [http://metacyc.org/META/NEW-IMAGE?object=CALVIN-PWY CALVIN-PWY]
+
−
** '''13''' reactions found over '''13''' reactions in the full pathway
+
−
* [[P21-PWY]], pentose phosphate pathway (partial): [http://metacyc.org/META/NEW-IMAGE?object=P21-PWY P21-PWY]
+
−
** '''3''' reactions found over '''3''' reactions in the full pathway
+
−
* [[PWY-5723]], Rubisco shunt: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5723 PWY-5723]
+
−
** '''10''' reactions found over '''10''' reactions in the full pathway
+
−
* [[PWY-1861]], formaldehyde assimilation II (RuMP Cycle): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1861 PWY-1861]
+
−
** '''7''' reactions found over '''9''' reactions in the full pathway
+
−
* [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle): [http://metacyc.org/META/NEW-IMAGE?object=P185-PWY P185-PWY]
+
−
** '''11''' reactions found over '''12''' reactions in the full pathway
+
−
* [[NONOXIPENT-PWY]], pentose phosphate pathway (non-oxidative branch): [http://metacyc.org/META/NEW-IMAGE?object=NONOXIPENT-PWY NONOXIPENT-PWY]
+
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[orthology]]
 
−
** Source: [[orthology-athaliana]]
 
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-creinhardtii]]
 
−
*** Tool: [[pantograph]]
 
−
* Category: [[manual]]
 
−
** Source: [[manual-primary_network]]
 
 
* Category: [[annotation]]
 
* Category: [[annotation]]
−
** Source: [[annotation-experimental_annotation]]
 
−
*** Tool: [[pathwaytools]]
 
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27626 27626]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01830 R01830]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02621 R02621]
−
** [http://www.genome.jp/dbget-bin/www_bget?R01067 R01067]
+
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P22976 P22976]
+
** [http://www.uniprot.org/uniprot/Q08642 Q08642]
−
** [http://www.uniprot.org/uniprot/P29401 P29401]
+
** [http://www.uniprot.org/uniprot/P20717 P20717]
−
** [http://www.uniprot.org/uniprot/P33570 P33570]
+
** [http://www.uniprot.org/uniprot/P70708 P70708]
−
** [http://www.uniprot.org/uniprot/P21725 P21725]
+
{{#set: direction=LEFT-TO-RIGHT}}
−
** [http://www.uniprot.org/uniprot/Q58094 Q58094]
+
{{#set: common name=peptidylarginine_deiminase_(modular_protein)}}
−
** [http://www.uniprot.org/uniprot/Q9JTR1 Q9JTR1]
+
{{#set: ec number=EC-3.5.3.15}}
−
** [http://www.uniprot.org/uniprot/Q9CF56 Q9CF56]
+
{{#set: gene associated=Tiso_gene_16344|Tiso_gene_19262}}
−
** [http://www.uniprot.org/uniprot/P21726 P21726]
+
{{#set: in pathway=PWY-4921}}
−
** [http://www.uniprot.org/uniprot/P47312 P47312]
+
{{#set: reconstruction category=annotation}}
−
** [http://www.uniprot.org/uniprot/Q9PM31 Q9PM31]
+
{{#set: reconstruction source=annotation-in-silico_annotation}}
−
** [http://www.uniprot.org/uniprot/P43757 P43757]
+
{{#set: reconstruction tool=pathwaytools}}
−
** [http://www.uniprot.org/uniprot/Q58092 Q58092]
+
−
** [http://www.uniprot.org/uniprot/P45694 P45694]
+
−
** [http://www.uniprot.org/uniprot/Q52723 Q52723]
+
−
** [http://www.uniprot.org/uniprot/Q9Z475 Q9Z475]
+
−
** [http://www.uniprot.org/uniprot/P34736 P34736]
+
−
** [http://www.uniprot.org/uniprot/P33315 P33315]
+
−
** [http://www.uniprot.org/uniprot/Q42675 Q42675]
+
−
** [http://www.uniprot.org/uniprot/Q42676 Q42676]
+
−
** [http://www.uniprot.org/uniprot/Q42677 Q42677]
+
−
** [http://www.uniprot.org/uniprot/P46708 P46708]
+
−
** [http://www.uniprot.org/uniprot/P75611 P75611]
+
−
** [http://www.uniprot.org/uniprot/P73282 P73282]
+
−
** [http://www.uniprot.org/uniprot/Q49047 Q49047]
+
−
** [http://www.uniprot.org/uniprot/O20250 O20250]
+
−
** [http://www.uniprot.org/uniprot/O78327 O78327]
+
−
** [http://www.uniprot.org/uniprot/Q9URM2 Q9URM2]
+
−
** [http://www.uniprot.org/uniprot/Q9RFB7 Q9RFB7]
+
−
** [http://www.uniprot.org/uniprot/P23254 P23254]
+
−
** [http://www.uniprot.org/uniprot/P27302 P27302]
+
−
** [http://www.uniprot.org/uniprot/P29277 P29277]
+
−
{{#set: direction=REVERSIBLE}}
+
−
{{#set: common name=transketolase}}
+
−
{{#set: ec number=EC-2.2.1.1}}
+
−
{{#set: gene associated=Tiso_gene_11559|Tiso_gene_5008}}
+
−
{{#set: in pathway=PWY-6901|CALVIN-PWY|P21-PWY|PWY-5723|PWY-1861|P185-PWY|NONOXIPENT-PWY}}
+
−
{{#set: reconstruction category=orthology|manual|annotation}}
+
−
{{#set: reconstruction source=orthology-creinhardtii|annotation-experimental_annotation|orthology-athaliana|annotation-in-silico_annotation|manual-primary_network}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Revision as of 15:03, 21 March 2018

Reaction PROTEIN-ARGININE-DEIMINASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • peptidylarginine_deiminase_(modular_protein)
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-4921, protein citrullination: PWY-4921
    • 1 reactions found over 1 reactions in the full pathway

Reconstruction information

External links





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