Difference between revisions of "Tiso gene 18918"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6606 PWY-6606] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TAX-47...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2TRANSKETO-RXN 2TRANSKETO-RXN] == * direction: ** REVERSIBLE * common name: ** transketolase * ec n...")
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6606 PWY-6606] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2TRANSKETO-RXN 2TRANSKETO-RXN] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TAX-4751]
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** REVERSIBLE
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3193 TAX-3193]
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* common name:
 
* common name:
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** guanosine nucleotides degradation II
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** transketolase
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/2.2.1.1 EC-2.2.1.1]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''4''' reactions found over '''4''' reactions in the full pathway
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* With identifiers:
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* [[GUANINE-DEAMINASE-RXN]]
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** 1 [[XYLULOSE-5-PHOSPHATE]][c] '''+''' 1 [[ERYTHROSE-4P]][c] '''<=>''' 1 [[FRUCTOSE-6P]][c] '''+''' 1 [[GAP]][c]
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** 1 associated gene(s):
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* With common name(s):
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*** [[Tiso_gene_12280]]
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** 1 D-xylulose 5-phosphate[c] '''+''' 1 D-erythrose 4-phosphate[c] '''<=>''' 1 &beta;-D-fructofuranose 6-phosphate[c] '''+''' 1 D-glyceraldehyde 3-phosphate[c]
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** 2 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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== Genes associated with this reaction  ==
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*** [[orthology-creinhardtii]]
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Genes have been associated with this reaction based on different elements listed below.
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* [[RXN-7609]]
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* Gene: [[Tiso_gene_11559]]
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** 8 associated gene(s):
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** Source: [[annotation-experimental_annotation]]
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*** [[Tiso_gene_14435]]
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*** Assignment: EC-NUMBER
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*** [[Tiso_gene_5911]]
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* Gene: [[Tiso_gene_5008]]
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*** [[Tiso_gene_13929]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[Tiso_gene_6640]]
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*** Assignment: EC-NUMBER
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*** [[Tiso_gene_14246]]
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** Source: [[annotation-experimental_annotation]]
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*** [[Tiso_gene_14434]]
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*** Assignment: EC-NUMBER
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*** [[Tiso_gene_6988]]
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** Source: [[orthology-athaliana]]
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*** [[Tiso_gene_9166]]
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** Source: [[orthology-athaliana]]
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** 3 reconstruction source(s) associated:
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** Source: [[orthology-creinhardtii]]
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*** [[annotation-in-silico_annotation]]
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== Pathways  ==
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*** [[orthology-creinhardtii]]
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* [[PWY-6901]], superpathway of glucose and xylose degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6901 PWY-6901]
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*** [[orthology-esiliculosus]]
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** '''8''' reactions found over '''12''' reactions in the full pathway
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* [[RXN0-366]]
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* [[CALVIN-PWY]], Calvin-Benson-Bassham cycle: [http://metacyc.org/META/NEW-IMAGE?object=CALVIN-PWY CALVIN-PWY]
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** 2 associated gene(s):
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** '''13''' reactions found over '''13''' reactions in the full pathway
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*** [[Tiso_gene_12995]]
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* [[P21-PWY]], pentose phosphate pathway (partial): [http://metacyc.org/META/NEW-IMAGE?object=P21-PWY P21-PWY]
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*** [[Tiso_gene_11910]]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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** 1 reconstruction source(s) associated:
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* [[PWY-5723]], Rubisco shunt: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5723 PWY-5723]
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*** [[annotation-in-silico_annotation]]
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** '''10''' reactions found over '''10''' reactions in the full pathway
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* [[RXN0-901]]
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* [[PWY-1861]], formaldehyde assimilation II (RuMP Cycle): [http://metacyc.org/META/NEW-IMAGE?object=PWY-1861 PWY-1861]
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** 1 associated gene(s):
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** '''7''' reactions found over '''9''' reactions in the full pathway
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*** [[Tiso_gene_11775]]
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* [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle): [http://metacyc.org/META/NEW-IMAGE?object=P185-PWY P185-PWY]
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** 2 reconstruction source(s) associated:
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** '''11''' reactions found over '''12''' reactions in the full pathway
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*** [[orthology-athaliana]]
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* [[NONOXIPENT-PWY]], pentose phosphate pathway (non-oxidative branch): [http://metacyc.org/META/NEW-IMAGE?object=NONOXIPENT-PWY NONOXIPENT-PWY]
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*** [[annotation-in-silico_annotation]]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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== Reaction(s) not found ==
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== Reconstruction information  ==
 +
* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-creinhardtii]]
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*** Tool: [[pantograph]]
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* Category: [[manual]]
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** Source: [[manual-primary_network]]
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* Category: [[annotation]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: taxonomic range=TAX-4751}}
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* RHEA:
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{{#set: taxonomic range=TAX-3193}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27626 27626]
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{{#set: common name=guanosine nucleotides degradation II}}
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* LIGAND-RXN:
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{{#set: reaction found=4}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01830 R01830]
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{{#set: total reaction=4}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01067 R01067]
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{{#set: completion rate=100.0}}
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* UNIPROT:
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** [http://www.uniprot.org/uniprot/P22976 P22976]
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** [http://www.uniprot.org/uniprot/P29401 P29401]
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** [http://www.uniprot.org/uniprot/P33570 P33570]
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** [http://www.uniprot.org/uniprot/P21725 P21725]
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** [http://www.uniprot.org/uniprot/Q58094 Q58094]
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** [http://www.uniprot.org/uniprot/Q9JTR1 Q9JTR1]
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** [http://www.uniprot.org/uniprot/Q9CF56 Q9CF56]
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** [http://www.uniprot.org/uniprot/P21726 P21726]
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** [http://www.uniprot.org/uniprot/P47312 P47312]
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** [http://www.uniprot.org/uniprot/Q9PM31 Q9PM31]
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** [http://www.uniprot.org/uniprot/P43757 P43757]
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** [http://www.uniprot.org/uniprot/Q58092 Q58092]
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** [http://www.uniprot.org/uniprot/P45694 P45694]
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** [http://www.uniprot.org/uniprot/Q52723 Q52723]
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** [http://www.uniprot.org/uniprot/Q9Z475 Q9Z475]
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** [http://www.uniprot.org/uniprot/P34736 P34736]
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** [http://www.uniprot.org/uniprot/P33315 P33315]
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** [http://www.uniprot.org/uniprot/Q42675 Q42675]
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** [http://www.uniprot.org/uniprot/Q42676 Q42676]
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** [http://www.uniprot.org/uniprot/Q42677 Q42677]
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** [http://www.uniprot.org/uniprot/P46708 P46708]
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** [http://www.uniprot.org/uniprot/P75611 P75611]
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** [http://www.uniprot.org/uniprot/P73282 P73282]
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** [http://www.uniprot.org/uniprot/Q49047 Q49047]
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** [http://www.uniprot.org/uniprot/O20250 O20250]
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** [http://www.uniprot.org/uniprot/O78327 O78327]
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** [http://www.uniprot.org/uniprot/Q9URM2 Q9URM2]
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** [http://www.uniprot.org/uniprot/Q9RFB7 Q9RFB7]
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** [http://www.uniprot.org/uniprot/P23254 P23254]
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** [http://www.uniprot.org/uniprot/P27302 P27302]
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** [http://www.uniprot.org/uniprot/P29277 P29277]
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=transketolase}}
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{{#set: ec number=EC-2.2.1.1}}
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{{#set: gene associated=Tiso_gene_11559|Tiso_gene_5008}}
 +
{{#set: in pathway=PWY-6901|CALVIN-PWY|P21-PWY|PWY-5723|PWY-1861|P185-PWY|NONOXIPENT-PWY}}
 +
{{#set: reconstruction category=orthology|manual|annotation}}
 +
{{#set: reconstruction source=orthology-creinhardtii|orthology-athaliana|annotation-in-silico_annotation|manual-primary_network|annotation-experimental_annotation}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 15:03, 21 March 2018

Reaction 2TRANSKETO-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • transketolase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 D-xylulose 5-phosphate[c] + 1 D-erythrose 4-phosphate[c] <=> 1 β-D-fructofuranose 6-phosphate[c] + 1 D-glyceraldehyde 3-phosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6901, superpathway of glucose and xylose degradation: PWY-6901
    • 8 reactions found over 12 reactions in the full pathway
  • CALVIN-PWY, Calvin-Benson-Bassham cycle: CALVIN-PWY
    • 13 reactions found over 13 reactions in the full pathway
  • P21-PWY, pentose phosphate pathway (partial): P21-PWY
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-5723, Rubisco shunt: PWY-5723
    • 10 reactions found over 10 reactions in the full pathway
  • PWY-1861, formaldehyde assimilation II (RuMP Cycle): PWY-1861
    • 7 reactions found over 9 reactions in the full pathway
  • P185-PWY, formaldehyde assimilation III (dihydroxyacetone cycle): P185-PWY
    • 11 reactions found over 12 reactions in the full pathway
  • NONOXIPENT-PWY, pentose phosphate pathway (non-oxidative branch): NONOXIPENT-PWY
    • 5 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_18918&oldid=32093"