Difference between revisions of "Tiso gene 7213"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=2-3-DIHYDRODIPICOLINATE 2-3-DIHYDRODIPICOLINATE] == * smiles: ** C1(CC(N=C(C=1)C(=O)[O-])C(=O)[...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GUANINE-DEAMINASE-RXN GUANINE-DEAMINASE-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF...")
Line 1: Line 1:
−
[[Category:Metabolite]]
+
[[Category:Reaction]]
−
== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=2-3-DIHYDRODIPICOLINATE 2-3-DIHYDRODIPICOLINATE] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GUANINE-DEAMINASE-RXN GUANINE-DEAMINASE-RXN] ==
−
* smiles:
+
* direction:
−
** C1(CC(N=C(C=1)C(=O)[O-])C(=O)[O-])
+
** LEFT-TO-RIGHT
−
* inchi key:
+
−
** InChIKey=UWOCFOFVIBZJGH-YFKPBYRVSA-L
+
 
* common name:
 
* common name:
−
** (S)-2,3-dihydrodipicolinate
+
** ORF
−
* molecular weight:
+
* ec number:
−
** 167.121   
+
** [http://enzyme.expasy.org/EC/3.5.4.3 EC-3.5.4.3]
 
* Synonym(s):
 
* Synonym(s):
−
** 2,3-di-H-dipicolinate
 
−
** L-2,3-dihydrodipicolinate
 
  
−
== Reaction(s) known to consume the compound ==
+
== Reaction Formula ==
−
== Reaction(s) known to produce the compound ==
+
* With identifiers:
−
* [[R02292]]
+
** 1 [[WATER]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[GUANINE]][c] '''=>''' 1 [[AMMONIUM]][c] '''+''' 1 [[XANTHINE]][c]
−
== Reaction(s) of unknown directionality ==
+
* With common name(s):
 +
** 1 H2O[c] '''+''' 1 H+[c] '''+''' 1 guanine[c] '''=>''' 1 ammonium[c] '''+''' 1 xanthine[c]
 +
 
 +
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[Tiso_gene_12280]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-creinhardtii]]
 +
== Pathways  ==
 +
* [[P164-PWY]], purine nucleobases degradation I (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=P164-PWY P164-PWY]
 +
** '''4''' reactions found over '''17''' reactions in the full pathway
 +
* [[PWY-6608]], guanosine nucleotides degradation III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6608 PWY-6608]
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-5497]], purine nucleobases degradation II (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5497 PWY-5497]
 +
** '''7''' reactions found over '''24''' reactions in the full pathway
 +
* [[PWY-6606]], guanosine nucleotides degradation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6606 PWY-6606]
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-creinhardtii]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* PUBCHEM:
+
* RHEA:
−
** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=5460228 5460228]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14665 14665]
−
* CHEMSPIDER:
+
* LIGAND-RXN:
−
** [http://www.chemspider.com/Chemical-Structure.4573840.html 4573840]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01676 R01676]
−
* CHEBI:
+
{{#set: direction=LEFT-TO-RIGHT}}
−
** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=30620 30620]
+
{{#set: common name=ORF}}
−
* LIGAND-CPD:
+
{{#set: ec number=EC-3.5.4.3}}
−
** [http://www.genome.jp/dbget-bin/www_bget?C03340 C03340]
+
{{#set: gene associated=Tiso_gene_12280}}
−
* HMDB : HMDB12247
+
{{#set: in pathway=P164-PWY|PWY-6608|PWY-5497|PWY-6606}}
−
{{#set: smiles=C1(CC(N=C(C=1)C(=O)[O-])C(=O)[O-])}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: inchi key=InChIKey=UWOCFOFVIBZJGH-YFKPBYRVSA-L}}
+
{{#set: reconstruction source=orthology-creinhardtii|annotation-in-silico_annotation}}
−
{{#set: common name=(S)-2,3-dihydrodipicolinate}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
{{#set: molecular weight=167.121    }}
+
−
{{#set: common name=2,3-di-H-dipicolinate|L-2,3-dihydrodipicolinate}}
+
−
{{#set: produced by=R02292}}
+

Revision as of 15:04, 21 March 2018

Reaction GUANINE-DEAMINASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • ORF
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 H2O[c] + 1 H+[c] + 1 guanine[c] => 1 ammonium[c] + 1 xanthine[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • P164-PWY, purine nucleobases degradation I (anaerobic): P164-PWY
    • 4 reactions found over 17 reactions in the full pathway
  • PWY-6608, guanosine nucleotides degradation III: PWY-6608
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-5497, purine nucleobases degradation II (anaerobic): PWY-5497
    • 7 reactions found over 24 reactions in the full pathway
  • PWY-6606, guanosine nucleotides degradation II: PWY-6606
    • 4 reactions found over 4 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_7213&oldid=32195"