Difference between revisions of "ExchangeSeed CPD-3"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.1.27.9-RXN 3.1.27.9-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF ** trna_intron_ca...")
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=TRIGLSYN-PWY TRIGLSYN-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-275...")
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[[Category:Reaction]]
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[[Category:Pathway]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.1.27.9-RXN 3.1.27.9-RXN] ==
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=TRIGLSYN-PWY TRIGLSYN-PWY] ==
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* direction:
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* taxonomic range:
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-2759]
 
* common name:
 
* common name:
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** ORF
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** diacylglycerol and triacylglycerol biosynthesis
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** trna_intron_catalytic_cterminal_subfamily_protein
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* ec number:
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** [http://enzyme.expasy.org/EC/4.6.1.16 EC-4.6.1.16]
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* Synonym(s):
 
* Synonym(s):
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** triglyceride biosynthesis
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** Kennedy pathway
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** TAG biosynthesis
  
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== Reaction Formula ==
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== Reaction(s) found ==
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* With identifiers:
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'''7''' reactions found over '''7''' reactions in the full pathway
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** 1 [[CPD0-2350]][c] '''=>''' 1 [[Pre-tRNA-3-prime-half-molecules]][c] '''+''' 1 [[Pre-tRNA-5-prime-half-molecules]][c] '''+''' 1 [[tRNA-Introns]][c]
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* [[DIACYLGLYCEROL-O-ACYLTRANSFERASE-RXN]]
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* With common name(s):
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** 7 associated gene(s):
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** 1 a polycistronic tRNA precursor[c] '''=>''' 1 a 3'-half-tRNA molecule with a 5'-OH end[c] '''+''' 1 a 5'-half-tRNA molecule with a 2',3'-cyclic phosphate end[c] '''+''' 1 a tRNA intron with a 2',3'-cyclic phosphate and a 5'-hydroxyl terminus[c]
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*** [[Tiso_gene_20057]]
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*** [[Tiso_gene_11824]]
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== Genes associated with this reaction  ==
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*** [[Tiso_gene_3902]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[Tiso_gene_8007]]
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* [[Tiso_gene_3776]]
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*** [[Tiso_gene_8889]]
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** IN-SILICO_ANNOTATION
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*** [[Tiso_gene_8006]]
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***EC-NUMBER
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*** [[Tiso_gene_20058]]
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* [[Tiso_gene_10338]]
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** 2 reconstruction source(s) associated:
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** IN-SILICO_ANNOTATION
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*** [[annotation-in-silico_annotation]]
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***EC-NUMBER
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*** [[orthology-esiliculosus]]
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* [[Tiso_gene_5254]]
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* [[PHOSPHATIDATE-PHOSPHATASE-RXN]]
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** IN-SILICO_ANNOTATION
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** 2 associated gene(s):
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***EC-NUMBER
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*** [[Tiso_gene_5063]]
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== Pathways  ==
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*** [[Tiso_gene_7386]]
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* [[PWY-6689]], tRNA splicing I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6689 PWY-6689]
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** 1 reconstruction source(s) associated:
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** '''2''' reactions found over '''7''' reactions in the full pathway
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*** [[annotation-in-silico_annotation]]
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* [[PWY-7803]], tRNA splicing II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7803 PWY-7803]
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* [[RXN-12383]]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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** 0 associated gene:
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== Reconstruction information  ==
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** 1 reconstruction source(s) associated:
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* Category: [[annotation]]
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*** [[annotation-in-silico_annotation]]
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** Source: [[annotation-in-silico_annotation]]
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* [[RXN-12959]]
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*** Tool: [[pathwaytools]]
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** 0 associated gene:
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** 1 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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* [[RXN-1381]]
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** 0 associated gene:
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** 1 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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* [[RXN-1623]]
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** 1 associated gene(s):
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*** [[Tiso_gene_13959]]
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** 3 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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*** [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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* [[RXN-1641]]
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** 0 associated gene:
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** 1 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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== Reaction(s) not found ==
 
== External links  ==
 
== External links  ==
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* UNIPROT:
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* ARACYC:
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** [http://www.uniprot.org/uniprot/O07118 O07118]
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** [http://metacyc.org/ARA/NEW-IMAGE?object=TRIGLSYN-PWY TRIGLSYN-PWY]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: taxonomic range=TAX-2759}}
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{{#set: common name=ORF}}
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{{#set: common name=diacylglycerol and triacylglycerol biosynthesis}}
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{{#set: common name=trna_intron_catalytic_cterminal_subfamily_protein}}
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{{#set: common name=triglyceride biosynthesis|Kennedy pathway|TAG biosynthesis}}
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{{#set: ec number=EC-4.6.1.16}}
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{{#set: reaction found=7}}
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{{#set: gene associated=Tiso_gene_3776|Tiso_gene_10338|Tiso_gene_5254}}
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{{#set: total reaction=7}}
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{{#set: in pathway=PWY-6689|PWY-7803}}
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{{#set: completion rate=100.0}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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Revision as of 15:06, 21 March 2018

Pathway TRIGLSYN-PWY

  • taxonomic range:
  • common name:
    • diacylglycerol and triacylglycerol biosynthesis
  • Synonym(s):
    • triglyceride biosynthesis
    • Kennedy pathway
    • TAG biosynthesis

Reaction(s) found

7 reactions found over 7 reactions in the full pathway

Reaction(s) not found

External links




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