Difference between revisions of "CPD-11524"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Gene == Gene Tiso_gene_140 == * left end position: ** 6536 * transcription direction: ** NEGATIVE * right end position: ** 8330 * centisome position: ** 16.109632...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=CYSTEINE--TRNA-LIGASE-RXN CYSTEINE--TRNA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * common name...")
Line 1: Line 1:
−
[[Category:Gene]]
+
[[Category:Reaction]]
−
== Gene Tiso_gene_140 ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=CYSTEINE--TRNA-LIGASE-RXN CYSTEINE--TRNA-LIGASE-RXN] ==
−
* left end position:
+
* direction:
−
** 6536
+
** LEFT-TO-RIGHT
−
* transcription direction:
+
* common name:
−
** NEGATIVE
+
** cysteinyl-trna
−
* right end position:
+
** cysteine--trna_ligase
−
** 8330
+
* ec number:
−
* centisome position:
+
** [http://enzyme.expasy.org/EC/6.1.1.16 EC-6.1.1.16]
−
** 16.109632   
+
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reactions associated ==
+
== Reaction Formula ==
−
* [[QUINOPRIBOTRANS-RXN]]
+
* With identifiers:
−
** in-silico_annotation
+
** 1 [[CYS]][c] '''+''' 1 [[CYS-tRNAs]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[Charged-CYS-tRNAs]][c] '''+''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c]
−
***automated-name-match
+
* With common name(s):
−
== Pathways associated ==
+
** 1 L-cysteine[c] '''+''' 1 a tRNAcys[c] '''+''' 1 ATP[c] '''=>''' 1 an L-cysteinyl-[tRNAcys][c] '''+''' 1 AMP[c] '''+''' 1 diphosphate[c]
−
* [[PWY-5316]]
+
 
−
* [[PWY-5653]]
+
== Genes associated with this reaction  ==
−
* [[PYRIDNUCSYN-PWY]]
+
Genes have been associated with this reaction based on different elements listed below.
−
* [[PWY-7342]]
+
* Gene: [[Tiso_gene_10881]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_17657]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
== Pathways ==
 +
* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
 +
** '''21''' reactions found over '''21''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
{{#set: left end position=6536}}
+
* LIGAND-RXN:
−
{{#set: transcription direction=NEGATIVE}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R03650 R03650]
−
{{#set: right end position=8330}}
+
* UNIPROT:
−
{{#set: centisome position=16.109632    }}
+
** [http://www.uniprot.org/uniprot/Q9PPB8 Q9PPB8]
−
{{#set: reaction associated=QUINOPRIBOTRANS-RXN}}
+
** [http://www.uniprot.org/uniprot/Q06752 Q06752]
−
{{#set: pathway associated=PWY-5316|PWY-5653|PYRIDNUCSYN-PWY|PWY-7342}}
+
** [http://www.uniprot.org/uniprot/P43816 P43816]
 +
** [http://www.uniprot.org/uniprot/O29836 O29836]
 +
** [http://www.uniprot.org/uniprot/Q9CEJ0 Q9CEJ0]
 +
** [http://www.uniprot.org/uniprot/O58370 O58370]
 +
** [http://www.uniprot.org/uniprot/O83129 O83129]
 +
** [http://www.uniprot.org/uniprot/Q9ZE62 Q9ZE62]
 +
** [http://www.uniprot.org/uniprot/Q9ZKW6 Q9ZKW6]
 +
** [http://www.uniprot.org/uniprot/Q9WZH8 Q9WZH8]
 +
** [http://www.uniprot.org/uniprot/P41259 P41259]
 +
** [http://www.uniprot.org/uniprot/O51545 O51545]
 +
** [http://www.uniprot.org/uniprot/Q9Z6X4 Q9Z6X4]
 +
** [http://www.uniprot.org/uniprot/O67163 O67163]
 +
** [http://www.uniprot.org/uniprot/Q9JWJ3 Q9JWJ3]
 +
** [http://www.uniprot.org/uniprot/P47495 P47495]
 +
** [http://www.uniprot.org/uniprot/P75423 P75423]
 +
** [http://www.uniprot.org/uniprot/P74330 P74330]
 +
** [http://www.uniprot.org/uniprot/Q9UWP2 Q9UWP2]
 +
** [http://www.uniprot.org/uniprot/P21888 P21888]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=cysteinyl-trna}}
 +
{{#set: common name=cysteine--trna_ligase}}
 +
{{#set: ec number=EC-6.1.1.16}}
 +
{{#set: gene associated=Tiso_gene_10881|Tiso_gene_17657}}
 +
{{#set: in pathway=TRNA-CHARGING-PWY}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 15:07, 21 March 2018

Reaction CYSTEINE--TRNA-LIGASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • cysteinyl-trna
    • cysteine--trna_ligase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 L-cysteine[c] + 1 a tRNAcys[c] + 1 ATP[c] => 1 an L-cysteinyl-[tRNAcys][c] + 1 AMP[c] + 1 diphosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=CPD-11524&oldid=32478"