Difference between revisions of "CITSYN-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11921 RXN-11921] == * direction: ** LEFT-TO-RIGHT * common name: ** 3-methylcrotonyl-CoA:acetyl...")
(Created page with "Category:Gene == Gene Tiso_gene_140 == * right end position: ** 8330 * transcription direction: ** NEGATIVE * left end position: ** 6536 * centisome position: ** 16.109632...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11921 RXN-11921] ==
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== Gene Tiso_gene_140 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 8330
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* common name:
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* transcription direction:
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** 3-methylcrotonyl-CoA:acetyl-CoA C-acyltransferase
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** NEGATIVE
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* ec number:
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* left end position:
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** [http://enzyme.expasy.org/EC/2.3.1 EC-2.3.1]
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** 6536
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* centisome position:
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** 16.109632   
 
* Synonym(s):
 
* Synonym(s):
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** 5-methyl-3-oxo-4-hexenoyl-CoA thiolase
 
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[QUINOPRIBOTRANS-RXN]]
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** 1 [[CPD-12906]][c] '''+''' 1 [[CO-A]][c] '''=>''' 1 [[ACETYL-COA]][c] '''+''' 1 [[3-METHYL-CROTONYL-COA]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: automated-name-match
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** 1 5-methyl-3-oxo-4-hexenoyl-CoA[c] '''+''' 1 coenzyme A[c] '''=>''' 1 acetyl-CoA[c] '''+''' 1 3-methylcrotonyl-CoA[c]
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== Pathways associated ==
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* [[PWY-5316]]
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== Genes associated with this reaction  ==
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* [[PWY-5653]]
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Genes have been associated with this reaction based on different elements listed below.
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* [[PYRIDNUCSYN-PWY]]
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* [[Tiso_gene_16181]]
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* [[PWY-7342]]
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[esiliculosus]]
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== Pathways ==
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* [[PWY-6672]], cis-genanyl-CoA degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6672 PWY-6672]
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** '''4''' reactions found over '''9''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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{{#set: right end position=8330}}
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** [http://www.genome.jp/dbget-bin/www_bget?R08095 R08095]
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{{#set: transcription direction=NEGATIVE}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: left end position=6536}}
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{{#set: common name=3-methylcrotonyl-CoA:acetyl-CoA C-acyltransferase}}
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{{#set: centisome position=16.109632    }}
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{{#set: ec number=EC-2.3.1}}
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{{#set: reaction associated=QUINOPRIBOTRANS-RXN}}
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{{#set: common name=5-methyl-3-oxo-4-hexenoyl-CoA thiolase}}
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{{#set: pathway associated=PWY-5316|PWY-5653|PYRIDNUCSYN-PWY|PWY-7342}}
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{{#set: gene associated=Tiso_gene_16181}}
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{{#set: in pathway=PWY-6672}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction source=orthology-athaliana|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph}}
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Revision as of 15:07, 21 March 2018

Gene Tiso_gene_140

  • right end position:
    • 8330
  • transcription direction:
    • NEGATIVE
  • left end position:
    • 6536
  • centisome position:
    • 16.109632
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=CITSYN-RXN&oldid=32483"