Difference between revisions of "N-terminal-Amino-Acids"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY66-389 PWY66-389] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-40674 TAX...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13603 RXN-13603] == * direction: ** LEFT-TO-RIGHT * common name: ** neolinustatin β-digluc...")
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY66-389 PWY66-389] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13603 RXN-13603] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-40674 TAX-40674]
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** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** phytol degradation
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** neolinustatin β-diglucosidase
 +
** beta-glucosidase-like_chloroplastic
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** low_quality_protein:_beta-glucosidase-like_chloroplastic-like
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** ORF
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** beta_glucosidase
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* ec number:
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** [http://enzyme.expasy.org/EC/3.2.1.21 EC-3.2.1.21]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''4''' reactions found over '''4''' reactions in the full pathway
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* With identifiers:
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* [[RXN66-478]]
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** 1 [[WATER]][c] '''+''' 1 [[CPD-14596]][c] '''=>''' 1 [[CPD-10277]][c] '''+''' 1 [[Glucopyranose]][c]
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** 5 associated gene(s):
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* With common name(s):
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*** [[Tiso_gene_6563]]
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** 1 H2O[c] '''+''' 1 neolinustatin[c] '''=>''' 1 lotaustralin[c] '''+''' 1 D-glucopyranose[c]
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*** [[Tiso_gene_6562]]
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*** [[Tiso_gene_5424]]
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== Genes associated with this reaction  ==
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*** [[Tiso_gene_5425]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[Tiso_gene_7649]]
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* Gene: [[Tiso_gene_15067]]
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** 1 reconstruction source(s) associated:
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** Source: [[annotation-in-silico_annotation]]
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*** [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* [[RXN66-479]]
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* Gene: [[Tiso_gene_6188]]
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** 0 associated gene:
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** Source: [[annotation-in-silico_annotation]]
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** 1 reconstruction source(s) associated:
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*** Assignment: EC-NUMBER
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*** [[annotation-in-silico_annotation]]
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* Gene: [[Tiso_gene_3467]]
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* [[RXN66-480]]
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** Source: [[annotation-in-silico_annotation]]
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** 9 associated gene(s):
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*** Assignment: EC-NUMBER
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*** [[Tiso_gene_10876]]
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** Source: [[annotation-experimental_annotation]]
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*** [[Tiso_gene_348]]
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*** Assignment: EC-NUMBER
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*** [[Tiso_gene_13394]]
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* Gene: [[Tiso_gene_6007]]
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*** [[Tiso_gene_135]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[Tiso_gene_9394]]
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*** Assignment: EC-NUMBER
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*** [[Tiso_gene_136]]
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** Source: [[annotation-experimental_annotation]]
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*** [[Tiso_gene_4191]]
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*** Assignment: EC-NUMBER
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*** [[Tiso_gene_500]]
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* Gene: [[Tiso_gene_13306]]
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*** [[Tiso_gene_7855]]
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** Source: [[annotation-in-silico_annotation]]
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** 3 reconstruction source(s) associated:
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*** Assignment: EC-NUMBER
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*** [[annotation-experimental_annotation]]
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* Gene: [[Tiso_gene_13305]]
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*** [[annotation-in-silico_annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[orthology-esiliculosus]]
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*** Assignment: EC-NUMBER
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* [[RXN66-482]]
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** Source: [[annotation-experimental_annotation]]
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** 3 associated gene(s):
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*** Assignment: EC-NUMBER
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*** [[Tiso_gene_10337]]
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* Gene: [[Tiso_gene_5836]]
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*** [[Tiso_gene_18041]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[Tiso_gene_18040]]
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*** Assignment: EC-NUMBER
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** 1 reconstruction source(s) associated:
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** Source: [[annotation-experimental_annotation]]
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*** [[orthology-esiliculosus]]
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*** Assignment: EC-NUMBER
−
== Reaction(s) not found ==
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* Gene: [[Tiso_gene_8669]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_2843]]
 +
** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_10001]]
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_6497]]
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** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_2344]]
 +
** Source: [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_15066]]
 +
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_6187]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
== Pathways  ==
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* [[PWY-7092]], neolinustatin bioactivation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7092 PWY-7092]
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** '''2''' reactions found over '''3''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: taxonomic range=TAX-40674}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=phytol degradation}}
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{{#set: common name=neolinustatin β-diglucosidase}}
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{{#set: reaction found=4}}
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{{#set: common name=beta-glucosidase-like_chloroplastic}}
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{{#set: total reaction=4}}
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{{#set: common name=low_quality_protein:_beta-glucosidase-like_chloroplastic-like}}
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{{#set: completion rate=100.0}}
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{{#set: common name=ORF}}
 +
{{#set: common name=beta_glucosidase}}
 +
{{#set: ec number=EC-3.2.1.21}}
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{{#set: gene associated=Tiso_gene_15067|Tiso_gene_6188|Tiso_gene_3467|Tiso_gene_6007|Tiso_gene_13306|Tiso_gene_13305|Tiso_gene_5836|Tiso_gene_8669|Tiso_gene_2843|Tiso_gene_10001|Tiso_gene_6497|Tiso_gene_2344|Tiso_gene_15066|Tiso_gene_6187}}
 +
{{#set: in pathway=PWY-7092}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 15:09, 21 March 2018

Reaction RXN-13603

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • neolinustatin β-diglucosidase
    • beta-glucosidase-like_chloroplastic
    • low_quality_protein:_beta-glucosidase-like_chloroplastic-like
    • ORF
    • beta_glucosidase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 H2O[c] + 1 neolinustatin[c] => 1 lotaustralin[c] + 1 D-glucopyranose[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7092, neolinustatin bioactivation: PWY-7092
    • 2 reactions found over 3 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=N-terminal-Amino-Acids&oldid=32608"