Difference between revisions of "Tiso gene 671"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6133 PWY-6133] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-40674 TAX-4...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ORNITHINE-CYCLODEAMINASE-RXN ORNITHINE-CYCLODEAMINASE-RXN] == * direction: ** LEFT-TO-RIGHT * commo...")
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6133 PWY-6133] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ORNITHINE-CYCLODEAMINASE-RXN ORNITHINE-CYCLODEAMINASE-RXN] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-40674 TAX-40674]
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** LEFT-TO-RIGHT
 
* common name:
 
* common name:
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** (S)-reticuline biosynthesis II
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** ornithine_cyclodeaminase
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* ec number:
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** [http://enzyme.expasy.org/EC/4.3.1.12 EC-4.3.1.12]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''2''' reactions found over '''7''' reactions in the full pathway
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* With identifiers:
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* [[RXN-5861]]
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** 1 [[L-ORNITHINE]][c] '''=>''' 1 [[PRO]][c] '''+''' 1 [[AMMONIUM]][c]
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** 1 associated gene(s):
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* With common name(s):
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*** [[Tiso_gene_1791]]
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** 1 L-ornithine[c] '''=>''' 1 L-proline[c] '''+''' 1 ammonium[c]
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** 1 reconstruction source(s) associated:
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*** [[annotation-in-silico_annotation]]
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== Genes associated with this reaction  ==
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* [[TYROSINE-DECARBOXYLASE-RXN]]
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Genes have been associated with this reaction based on different elements listed below.
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** 1 associated gene(s):
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* Gene: [[Tiso_gene_1843]]
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*** [[Tiso_gene_3686]]
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** Source: [[annotation-in-silico_annotation]]
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** 1 reconstruction source(s) associated:
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*** Assignment: AUTOMATED-NAME-MATCH
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*** [[orthology-esiliculosus]]
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** Source: [[orthology-esiliculosus]]
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== Reaction(s) not found ==
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* Gene: [[Tiso_gene_17134]]
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* [http://metacyc.org/META/NEW-IMAGE?object=2.6.1.49-RXN 2.6.1.49-RXN]
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** Source: [[annotation-in-silico_annotation]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9978 RXN-9978]
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*** Assignment: AUTOMATED-NAME-MATCH
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9979 RXN-9979]
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** Source: [[orthology-esiliculosus]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9980 RXN-9980]
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== Pathways  ==
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-9981 RXN-9981]
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* [[ORN-AMINOPENTANOATE-CAT-PWY]], L-ornithine degradation I (L-proline biosynthesis): [http://metacyc.org/META/NEW-IMAGE?object=ORN-AMINOPENTANOATE-CAT-PWY ORN-AMINOPENTANOATE-CAT-PWY]
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** '''1''' reactions found over '''1''' reactions in the full pathway
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* [[ARG-GLU-PWY]], L-arginine degradation VII (arginase 3 pathway): [http://metacyc.org/META/NEW-IMAGE?object=ARG-GLU-PWY ARG-GLU-PWY]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: taxonomic range=TAX-40674}}
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* RHEA:
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{{#set: common name=(S)-reticuline biosynthesis II}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24368 24368]
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{{#set: reaction found=2}}
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* LIGAND-RXN:
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{{#set: total reaction=7}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00671 R00671]
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{{#set: completion rate=29.0}}
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* UNIPROT:
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** [http://www.uniprot.org/uniprot/Q59701 Q59701]
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** [http://www.uniprot.org/uniprot/P09773 P09773]
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** [http://www.uniprot.org/uniprot/P33728 P33728]
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** [http://www.uniprot.org/uniprot/O68052 O68052]
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** [http://www.uniprot.org/uniprot/Q9WWA2 Q9WWA2]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=ornithine_cyclodeaminase}}
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{{#set: ec number=EC-4.3.1.12}}
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{{#set: gene associated=Tiso_gene_1843|Tiso_gene_17134}}
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{{#set: in pathway=ORN-AMINOPENTANOATE-CAT-PWY|ARG-GLU-PWY}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 15:10, 21 March 2018

Reaction ORNITHINE-CYCLODEAMINASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • ornithine_cyclodeaminase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 L-ornithine[c] => 1 L-proline[c] + 1 ammonium[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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