Difference between revisions of "RXN-15588"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11244 RXN-11244] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/...")
 
(Created page with "Category:Gene == Gene Tiso_gene_879 == * left end position: ** 7505 * transcription direction: ** POSITIVE * right end position: ** 9477 * centisome position: ** 26.956648...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11244 RXN-11244] ==
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== Gene Tiso_gene_879 ==
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* direction:
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* left end position:
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** LEFT-TO-RIGHT
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** 7505
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* ec number:
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* transcription direction:
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** [http://enzyme.expasy.org/EC/4.2.1.17 EC-4.2.1.17]
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** POSITIVE
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* right end position:
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** 9477
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* centisome position:
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** 26.956648   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* [[3.4.11.5-RXN]]
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** 1 [[WATER]][c] '''+''' 1 [[P-COUMAROYL-COA]][c] '''=>''' 1 [[CPD-12199]][c]
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** in-silico_annotation
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* With common name(s):
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***ec-number
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** 1 H2O[c] '''+''' 1 4-coumaroyl-CoA[c] '''=>''' 1 3S-(4-hydroxyphenyl)-3-hydroxy-propanoyl-CoA[c]
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** experimental_annotation
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***ec-number
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== Genes associated with this reaction  ==
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== Pathways associated ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_14262]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_6885]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_16145]]
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** [[pantograph]]-[[esiliculosus]]
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== Pathways ==
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* [[PWY-6435]], 4-hydroxybenzoate biosynthesis V: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6435 PWY-6435]
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** '''4''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-7046]], 4-coumarate degradation (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7046 PWY-7046]
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** '''2''' reactions found over '''6''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[esiliculosus]]
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== External links  ==
 
== External links  ==
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: left end position=7505}}
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{{#set: ec number=EC-4.2.1.17}}
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{{#set: transcription direction=POSITIVE}}
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{{#set: gene associated=Tiso_gene_14262|Tiso_gene_6885|Tiso_gene_16145}}
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{{#set: right end position=9477}}
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{{#set: in pathway=PWY-6435|PWY-7046}}
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{{#set: centisome position=26.956648    }}
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{{#set: reconstruction category=orthology}}
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{{#set: reaction associated=3.4.11.5-RXN}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=esiliculosus}}
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Revision as of 16:10, 10 January 2018

Gene Tiso_gene_879

  • left end position:
    • 7505
  • transcription direction:
    • POSITIVE
  • right end position:
    • 9477
  • centisome position:
    • 26.956648
  • Synonym(s):

Reactions associated

  • 3.4.11.5-RXN
    • in-silico_annotation
      • ec-number
    • experimental_annotation
      • ec-number

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-15588&oldid=11806"