Difference between revisions of "Cis-delta7-3-oxo-cerotoyl-ACPs"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7524 PWY-7524] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-21...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=5.4.99.17-RXN 5.4.99.17-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF * ec number: **...")
Line 1: Line 1:
−
[[Category:Pathway]]
+
[[Category:Reaction]]
−
== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7524 PWY-7524] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=5.4.99.17-RXN 5.4.99.17-RXN] ==
−
* taxonomic range:
+
* direction:
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-2157]
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** mevalonate pathway III (archaea)
+
** ORF
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/5.4.99.17 EC-5.4.99.17]
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction(s) found ==
+
== Reaction Formula ==
−
'''4''' reactions found over '''8''' reactions in the full pathway
+
* With identifiers:
−
* [[1.1.1.34-RXN]]
+
** 1 [[SQUALENE]][c] '''=>''' 1 [[HOP-2229-ENE]][c]
−
** 2 associated gene(s):
+
* With common name(s):
−
*** [[Tiso_gene_17889]]
+
** 1 squalene[c] '''=>''' 1 hop-22(29)-ene[c]
−
*** [[Tiso_gene_16182]]
+
 
−
** 1 reconstruction source(s) associated:
+
== Genes associated with this reaction  ==
−
*** [[annotation-in-silico_annotation]]
+
Genes have been associated with this reaction based on different elements listed below.
−
* [[ACETYL-COA-ACETYLTRANSFER-RXN]]
+
* Gene: [[Tiso_gene_12198]]
−
** 3 associated gene(s):
+
** Source: [[annotation-in-silico_annotation]]
−
*** [[Tiso_gene_16181]]
+
*** Assignment: EC-NUMBER
−
*** [[Tiso_gene_15327]]
+
== Pathways  ==
−
*** [[Tiso_gene_17451]]
+
* [[PWY-7072]], hopanoid biosynthesis (bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7072 PWY-7072]
−
** 4 reconstruction source(s) associated:
+
** '''1''' reactions found over '''14''' reactions in the full pathway
−
*** [[orthology-athaliana]]
+
* [[PWY-6098]], diploterol and cycloartenol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6098 PWY-6098]
−
*** [[orthology-creinhardtii]]
+
** '''2''' reactions found over '''4''' reactions in the full pathway
−
*** [[orthology-synechocystis]]
+
== Reconstruction information  ==
−
*** [[orthology-esiliculosus]]
+
* Category: [[annotation]]
−
* [[HYDROXYMETHYLGLUTARYL-COA-SYNTHASE-RXN]]
+
** Source: [[annotation-in-silico_annotation]]
−
** 3 associated gene(s):
+
*** Tool: [[pathwaytools]]
−
*** [[Tiso_gene_14303]]
+
−
*** [[Tiso_gene_9236]]
+
−
*** [[Tiso_gene_8563]]
+
−
** 3 reconstruction source(s) associated:
+
−
*** [[orthology-athaliana]]
+
−
*** [[annotation-in-silico_annotation]]
+
−
*** [[orthology-esiliculosus]]
+
−
* [[IPPISOM-RXN]]
+
−
** 1 associated gene(s):
+
−
*** [[Tiso_gene_8653]]
+
−
** 2 reconstruction source(s) associated:
+
−
*** [[manual-primary_network]]
+
−
*** [[annotation-in-silico_annotation]]
+
−
== Reaction(s) not found ==
+
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-10068 RXN-10068]
+
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-15647 RXN-15647]
+
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-15648 RXN-15648]
+
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-15649 RXN-15649]
+
 
== External links  ==
 
== External links  ==
−
{{#set: taxonomic range=TAX-2157}}
+
* RHEA:
−
{{#set: common name=mevalonate pathway III (archaea)}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17637 17637]
−
{{#set: reaction found=4}}
+
* LIGAND-RXN:
−
{{#set: total reaction=8}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R07322 R07322]
−
{{#set: completion rate=50.0}}
+
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=ORF}}
 +
{{#set: ec number=EC-5.4.99.17}}
 +
{{#set: gene associated=Tiso_gene_12198}}
 +
{{#set: in pathway=PWY-7072|PWY-6098}}
 +
{{#set: reconstruction category=annotation}}
 +
{{#set: reconstruction source=annotation-in-silico_annotation}}
 +
{{#set: reconstruction tool=pathwaytools}}

Revision as of 15:12, 21 March 2018

Reaction 5.4.99.17-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • ORF
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 squalene[c] => 1 hop-22(29)-ene[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7072, hopanoid biosynthesis (bacteria): PWY-7072
    • 1 reactions found over 14 reactions in the full pathway
  • PWY-6098, diploterol and cycloartenol biosynthesis: PWY-6098
    • 2 reactions found over 4 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Cis-delta7-3-oxo-cerotoyl-ACPs&oldid=32904"