Difference between revisions of "Tiso gene 19115"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6470 PWY-6470] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-201174 TAX-...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8042 RXN-8042] == * direction: ** LEFT-TO-RIGHT * common name: ** carotene_isomerase ** caroten...")
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6470 PWY-6470] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-8042 RXN-8042] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-201174 TAX-201174]
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1239 TAX-1239]
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* common name:
 
* common name:
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** peptidoglycan biosynthesis V (β-lactam resistance)
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** carotene_isomerase
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** carotenoid_isomerase
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* ec number:
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** [http://enzyme.expasy.org/EC/5.2.1.13 EC-5.2.1.13]
 
* Synonym(s):
 
* Synonym(s):
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** penicillin resistance
 
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** β-lactam resistance
 
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''2''' reactions found over '''11''' reactions in the full pathway
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* With identifiers:
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* [[PWY-6386]]
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** 1 [[CPD-7496]][c] '''=>''' 1 [[CPD1F-114]][c]
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** 0 associated gene:
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* With common name(s):
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* [[RXN-11347]]
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** 1 prolycopene[c] '''=>''' 1 all-trans-lycopene[c]
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** 1 associated gene(s):
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*** [[Tiso_gene_1604]]
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== Genes associated with this reaction  ==
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** 2 reconstruction source(s) associated:
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Genes have been associated with this reaction based on different elements listed below.
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*** [[annotation-in-silico_annotation]]
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* Gene: [[Tiso_gene_13369]]
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*** [[orthology-esiliculosus]]
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** Source: [[annotation-in-silico_annotation]]
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== Reaction(s) not found ==
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*** Assignment: AUTOMATED-NAME-MATCH
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* [http://metacyc.org/META/NEW-IMAGE?object=3.4.17.14-RXN 3.4.17.14-RXN]
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* Gene: [[Tiso_gene_13367]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11343 RXN-11343]
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** Source: [[annotation-in-silico_annotation]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11344 RXN-11344]
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*** Assignment: AUTOMATED-NAME-MATCH
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11345 RXN-11345]
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* Gene: [[Tiso_gene_917]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11346 RXN-11346]
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** Source: [[annotation-in-silico_annotation]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11348 RXN-11348]
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*** Assignment: AUTOMATED-NAME-MATCH
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-11349 RXN-11349]
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* Gene: [[Tiso_gene_916]]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-15521 RXN-15521]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[Tiso_gene_15802]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[Tiso_gene_915]]
 +
** Source: [[annotation-in-silico_annotation]]
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*** Assignment: AUTOMATED-NAME-MATCH
 +
== Pathways  ==
 +
* [[PWY-6475]], trans-lycopene biosynthesis II (plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6475 PWY-6475]
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** '''8''' reactions found over '''8''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: taxonomic range=TAX-201174}}
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* RHEA:
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{{#set: taxonomic range=TAX-1239}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30974 30974]
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{{#set: common name=peptidoglycan biosynthesis V (β-lactam resistance)}}
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* LIGAND-RXN:
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{{#set: common name=penicillin resistance|β-lactam resistance}}
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** [http://www.genome.jp/dbget-bin/www_bget?R07512 R07512]
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{{#set: reaction found=2}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: total reaction=11}}
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{{#set: common name=carotene_isomerase}}
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{{#set: completion rate=18.0}}
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{{#set: common name=carotenoid_isomerase}}
 +
{{#set: ec number=EC-5.2.1.13}}
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{{#set: gene associated=Tiso_gene_13369|Tiso_gene_13367|Tiso_gene_917|Tiso_gene_916|Tiso_gene_15802|Tiso_gene_915}}
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{{#set: in pathway=PWY-6475}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation}}
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{{#set: reconstruction tool=pathwaytools}}

Revision as of 15:13, 21 March 2018

Reaction RXN-8042

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • carotene_isomerase
    • carotenoid_isomerase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 prolycopene[c] => 1 all-trans-lycopene[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6475, trans-lycopene biosynthesis II (plants): PWY-6475
    • 8 reactions found over 8 reactions in the full pathway

Reconstruction information

External links





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