Difference between revisions of "H2Othu"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUTAMINESYN-RXN GLUTAMINESYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** glutamine_chl...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9674 RXN-9674] == * direction: ** LEFT-TO-RIGHT * common name: ** beta-glucosidase-like_chlorop...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUTAMINESYN-RXN GLUTAMINESYN-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9674 RXN-9674] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** glutamine_chloroplasticmitochondrial
+
** beta-glucosidase-like_chloroplastic
−
** glutamine_synthase
+
** low_quality_protein:_beta-glucosidase-like_chloroplastic-like
−
** glutamine_synthetase
+
** ORF
−
** isochorismatase_hydrolase
+
** beta_glucosidase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/6.3.1.2 EC-6.3.1.2]
+
** [http://enzyme.expasy.org/EC/3.2.1.21 EC-3.2.1.21]
 
* Synonym(s):
 
* Synonym(s):
−
** type I glutamate--ammonia ligase
 
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[AMMONIUM]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[GLT]][c] '''=>''' 1 [[Pi]][c] '''+''' 1 [[GLN]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[ADP]][c]
+
** 1 [[WATER]][c] '''+''' 1 [[CPD-10277]][c] '''=>''' 1 [[CPD-12699]][c] '''+''' 1 [[Glucopyranose]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 ammonium[c] '''+''' 1 ATP[c] '''+''' 1 L-glutamate[c] '''=>''' 1 phosphate[c] '''+''' 1 L-glutamine[c] '''+''' 1 H+[c] '''+''' 1 ADP[c]
+
** 1 H2O[c] '''+''' 1 lotaustralin[c] '''=>''' 1 (2R)-2-hydroxy-2-methylbutanenitrile[c] '''+''' 1 D-glucopyranose[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_13820]]
+
* Gene: [[Tiso_gene_15066]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
** [[pantograph]]-[[synechocystis]]
+
** Source: [[annotation-experimental_annotation]]
−
* [[Tiso_gene_6647]]
+
*** Assignment: EC-NUMBER
−
** IN-SILICO_ANNOTATION
+
* Gene: [[Tiso_gene_13306]]
−
***EC-NUMBER
+
** Source: [[annotation-in-silico_annotation]]
−
* [[Tiso_gene_13754]]
+
*** Assignment: EC-NUMBER
−
** IN-SILICO_ANNOTATION
+
* Gene: [[Tiso_gene_3467]]
−
***EC-NUMBER
+
** Source: [[annotation-in-silico_annotation]]
−
** EXPERIMENTAL_ANNOTATION
+
*** Assignment: EC-NUMBER
−
***EC-NUMBER
+
** Source: [[annotation-experimental_annotation]]
−
** [[pantograph]]-[[synechocystis]]
+
*** Assignment: EC-NUMBER
−
* [[Tiso_gene_14842]]
+
* Gene: [[Tiso_gene_2344]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[orthology-esiliculosus]]
−
***EC-NUMBER
+
* Gene: [[Tiso_gene_6497]]
−
** EXPERIMENTAL_ANNOTATION
+
** Source: [[orthology-esiliculosus]]
−
***EC-NUMBER
+
* Gene: [[Tiso_gene_8669]]
−
** [[pantograph]]-[[athaliana]]
+
** Source: [[annotation-in-silico_annotation]]
−
** [[pantograph]]-[[athaliana]]
+
*** Assignment: EC-NUMBER
−
** [[pantograph]]-[[athaliana]]
+
** Source: [[annotation-experimental_annotation]]
−
** [[pantograph]]-[[esiliculosus]]
+
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_2843]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_6007]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_10001]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_6188]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_13305]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_6187]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_15067]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_5836]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[GLNSYN-PWY]], L-glutamine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=GLNSYN-PWY GLNSYN-PWY]
+
* [[PWY-7092]], neolinustatin bioactivation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7092 PWY-7092]
−
** '''1''' reactions found over '''1''' reactions in the full pathway
+
** '''2''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY-5675]], nitrate reduction V (assimilatory): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5675 PWY-5675]
+
* [[PWY-6002]], lotaustralin degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6002 PWY-6002]
−
** '''2''' reactions found over '''4''' reactions in the full pathway
+
** '''1''' reactions found over '''2''' reactions in the full pathway
−
* [[PWY-381]], nitrate reduction II (assimilatory): [http://metacyc.org/META/NEW-IMAGE?object=PWY-381 PWY-381]
+
−
** '''3''' reactions found over '''3''' reactions in the full pathway
+
−
* [[PWY-6549]], L-glutamine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6549 PWY-6549]
+
−
** '''6''' reactions found over '''9''' reactions in the full pathway
+
−
* [[PWY-6964]], ammonia assimilation cycle II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6964 PWY-6964]
+
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
−
* [[PWY490-3]], nitrate reduction VI (assimilatory): [http://metacyc.org/META/NEW-IMAGE?object=PWY490-3 PWY490-3]
+
−
** '''3''' reactions found over '''4''' reactions in the full pathway
+
−
* [[PWY-6963]], ammonia assimilation cycle I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6963 PWY-6963]
+
−
** '''4''' reactions found over '''6''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
−
** Source: [[orthology-athaliana]]
 
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-synechocystis]]
 
−
*** Tool: [[pantograph]]
 
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
−
* Category: [[manual]]
 
−
** Source: [[manual-primary_network]]
 
 
* Category: [[annotation]]
 
* Category: [[annotation]]
−
** Source: [[annotation-experimental_annotation]]
 
−
*** Tool: [[pathwaytools]]
 
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-experimental_annotation]]
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16169 16169]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R00253 R00253]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P15103 P15103]
 
−
** [http://www.uniprot.org/uniprot/P15124 P15124]
 
−
** [http://www.uniprot.org/uniprot/P15623 P15623]
 
−
** [http://www.uniprot.org/uniprot/P21154 P21154]
 
−
** [http://www.uniprot.org/uniprot/P45627 P45627]
 
−
** [http://www.uniprot.org/uniprot/Q59982 Q59982]
 
−
** [http://www.uniprot.org/uniprot/Q7M314 Q7M314]
 
−
** [http://www.uniprot.org/uniprot/Q60182 Q60182]
 
−
** [http://www.uniprot.org/uniprot/P04078 P04078]
 
−
** [http://www.uniprot.org/uniprot/P00964 P00964]
 
−
** [http://www.uniprot.org/uniprot/P22248 P22248]
 
−
** [http://www.uniprot.org/uniprot/P07804 P07804]
 
−
** [http://www.uniprot.org/uniprot/P13564 P13564]
 
−
** [http://www.uniprot.org/uniprot/P12425 P12425]
 
−
** [http://www.uniprot.org/uniprot/P19064 P19064]
 
−
** [http://www.uniprot.org/uniprot/P16580 P16580]
 
−
** [http://www.uniprot.org/uniprot/P10656 P10656]
 
−
** [http://www.uniprot.org/uniprot/P11600 P11600]
 
−
** [http://www.uniprot.org/uniprot/P0A1P6 P0A1P6]
 
−
** [http://www.uniprot.org/uniprot/P0A9C5 P0A9C5]
 
−
** [http://www.uniprot.org/uniprot/P00965 P00965]
 
−
** [http://www.uniprot.org/uniprot/P04771 P04771]
 
−
** [http://www.uniprot.org/uniprot/P04770 P04770]
 
−
** [http://www.uniprot.org/uniprot/P15102 P15102]
 
−
** [http://www.uniprot.org/uniprot/P10583 P10583]
 
−
** [http://www.uniprot.org/uniprot/P23712 P23712]
 
−
** [http://www.uniprot.org/uniprot/P15105 P15105]
 
−
** [http://www.uniprot.org/uniprot/P08282 P08282]
 
−
** [http://www.uniprot.org/uniprot/P08281 P08281]
 
−
** [http://www.uniprot.org/uniprot/P07694 P07694]
 
−
** [http://www.uniprot.org/uniprot/P09606 P09606]
 
−
** [http://www.uniprot.org/uniprot/P14654 P14654]
 
−
** [http://www.uniprot.org/uniprot/P14655 P14655]
 
−
** [http://www.uniprot.org/uniprot/P14656 P14656]
 
−
** [http://www.uniprot.org/uniprot/P22878 P22878]
 
−
** [http://www.uniprot.org/uniprot/P19432 P19432]
 
−
** [http://www.uniprot.org/uniprot/P15106 P15106]
 
−
** [http://www.uniprot.org/uniprot/P19904 P19904]
 
−
** [http://www.uniprot.org/uniprot/P14636 P14636]
 
−
** [http://www.uniprot.org/uniprot/P04772 P04772]
 
−
** [http://www.uniprot.org/uniprot/P09826 P09826]
 
−
** [http://www.uniprot.org/uniprot/P05457 P05457]
 
−
** [http://www.uniprot.org/uniprot/Q9JSU6 Q9JSU6]
 
−
** [http://www.uniprot.org/uniprot/Q9PPK8 Q9PPK8]
 
−
** [http://www.uniprot.org/uniprot/O66514 O66514]
 
−
** [http://www.uniprot.org/uniprot/Q8X7G0 Q8X7G0]
 
−
** [http://www.uniprot.org/uniprot/Q9CDL9 Q9CDL9]
 
−
** [http://www.uniprot.org/uniprot/Q05650 Q05650]
 
−
** [http://www.uniprot.org/uniprot/P43794 P43794]
 
−
** [http://www.uniprot.org/uniprot/P31592 P31592]
 
−
** [http://www.uniprot.org/uniprot/Q27747 Q27747]
 
−
** [http://www.uniprot.org/uniprot/P12424 P12424]
 
−
** [http://www.uniprot.org/uniprot/Q04831 Q04831]
 
−
** [http://www.uniprot.org/uniprot/P24099 P24099]
 
−
** [http://www.uniprot.org/uniprot/O04998 O04998]
 
−
** [http://www.uniprot.org/uniprot/O04999 O04999]
 
−
** [http://www.uniprot.org/uniprot/P20479 P20479]
 
−
** [http://www.uniprot.org/uniprot/O75014 O75014]
 
−
** [http://www.uniprot.org/uniprot/P23794 P23794]
 
−
** [http://www.uniprot.org/uniprot/Q43127 Q43127]
 
−
** [http://www.uniprot.org/uniprot/Q9FHR0 Q9FHR0]
 
−
** [http://www.uniprot.org/uniprot/Q9C8C7 Q9C8C7]
 
−
** [http://www.uniprot.org/uniprot/P28786 P28786]
 
−
** [http://www.uniprot.org/uniprot/Q02154 Q02154]
 
−
** [http://www.uniprot.org/uniprot/Q05542 Q05542]
 
−
** [http://www.uniprot.org/uniprot/Q42624 Q42624]
 
−
** [http://www.uniprot.org/uniprot/P43518 P43518]
 
−
** [http://www.uniprot.org/uniprot/P52783 P52783]
 
−
** [http://www.uniprot.org/uniprot/Q43759 Q43759]
 
−
** [http://www.uniprot.org/uniprot/P38559 P38559]
 
−
** [http://www.uniprot.org/uniprot/P38560 P38560]
 
−
** [http://www.uniprot.org/uniprot/P38561 P38561]
 
−
** [http://www.uniprot.org/uniprot/P38562 P38562]
 
−
** [http://www.uniprot.org/uniprot/P38563 P38563]
 
−
** [http://www.uniprot.org/uniprot/P25462 P25462]
 
−
** [http://www.uniprot.org/uniprot/Q42625 Q42625]
 
−
** [http://www.uniprot.org/uniprot/P46410 P46410]
 
−
** [http://www.uniprot.org/uniprot/Q42802 Q42802]
 
−
** [http://www.uniprot.org/uniprot/Q42623 Q42623]
 
−
** [http://www.uniprot.org/uniprot/Q53045 Q53045]
 
−
** [http://www.uniprot.org/uniprot/P32288 P32288]
 
−
** [http://www.uniprot.org/uniprot/Q43066 Q43066]
 
−
** [http://www.uniprot.org/uniprot/Q59195 Q59195]
 
−
** [http://www.uniprot.org/uniprot/P51118 P51118]
 
−
** [http://www.uniprot.org/uniprot/P51119 P51119]
 
−
** [http://www.uniprot.org/uniprot/Q42950 Q42950]
 
−
** [http://www.uniprot.org/uniprot/Q42951 Q42951]
 
−
** [http://www.uniprot.org/uniprot/Q07939 Q07939]
 
−
** [http://www.uniprot.org/uniprot/Q43760 Q43760]
 
−
** [http://www.uniprot.org/uniprot/Q42688 Q42688]
 
−
** [http://www.uniprot.org/uniprot/Q42689 Q42689]
 
−
** [http://www.uniprot.org/uniprot/O22504 O22504]
 
−
** [http://www.uniprot.org/uniprot/O22505 O22505]
 
−
** [http://www.uniprot.org/uniprot/O22506 O22506]
 
−
** [http://www.uniprot.org/uniprot/Q59972 Q59972]
 
−
** [http://www.uniprot.org/uniprot/Q9UWN1 Q9UWN1]
 
−
** [http://www.uniprot.org/uniprot/Q9RDW7 Q9RDW7]
 
−
** [http://www.uniprot.org/uniprot/P43386 P43386]
 
−
** [http://www.uniprot.org/uniprot/P0A040 P0A040]
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=glutamine_chloroplasticmitochondrial}}
+
{{#set: common name=beta-glucosidase-like_chloroplastic}}
−
{{#set: common name=glutamine_synthase}}
+
{{#set: common name=low_quality_protein:_beta-glucosidase-like_chloroplastic-like}}
−
{{#set: common name=glutamine_synthetase}}
+
{{#set: common name=ORF}}
−
{{#set: common name=isochorismatase_hydrolase}}
+
{{#set: common name=beta_glucosidase}}
−
{{#set: ec number=EC-6.3.1.2}}
+
{{#set: ec number=EC-3.2.1.21}}
−
{{#set: common name=type I glutamate--ammonia ligase}}
+
{{#set: gene associated=Tiso_gene_15066|Tiso_gene_13306|Tiso_gene_3467|Tiso_gene_2344|Tiso_gene_6497|Tiso_gene_8669|Tiso_gene_2843|Tiso_gene_6007|Tiso_gene_10001|Tiso_gene_6188|Tiso_gene_13305|Tiso_gene_6187|Tiso_gene_15067|Tiso_gene_5836}}
−
{{#set: gene associated=Tiso_gene_13820|Tiso_gene_6647|Tiso_gene_13754|Tiso_gene_14842}}
+
{{#set: in pathway=PWY-7092|PWY-6002}}
−
{{#set: in pathway=GLNSYN-PWY|PWY-5675|PWY-381|PWY-6549|PWY-6964|PWY490-3|PWY-6963}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction category=orthology|manual|annotation}}
+
{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
−
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network}}
+
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 16:14, 21 March 2018

Reaction RXN-9674

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • beta-glucosidase-like_chloroplastic
    • low_quality_protein:_beta-glucosidase-like_chloroplastic-like
    • ORF
    • beta_glucosidase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 H2O[c] + 1 lotaustralin[c] => 1 (2R)-2-hydroxy-2-methylbutanenitrile[c] + 1 D-glucopyranose[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7092, neolinustatin bioactivation: PWY-7092
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-6002, lotaustralin degradation: PWY-6002
    • 1 reactions found over 2 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=H2Othu&oldid=33056"