Difference between revisions of "G5DHm"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=TRNA-PSEUDOURIDINE-SYNTHASE-I-RXN TRNA-PSEUDOURIDINE-SYNTHASE-I-RXN] == * direction: ** LEFT-TO-RIG...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7741 RXN-7741] == * direction: ** LEFT-TO-RIGHT * common name: ** red_chlorophyll_catabolite_re...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=TRNA-PSEUDOURIDINE-SYNTHASE-I-RXN TRNA-PSEUDOURIDINE-SYNTHASE-I-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7741 RXN-7741] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** drap_deaminase
+
** red_chlorophyll_catabolite_reductase
−
** pseudouridine_synthase_family_protein
+
−
** ORF
+
−
** pseudouridine_synthase
+
−
** Transmembrane_protein
+
−
** trna-pseudouridine_synthasei
+
−
** ribosomal_large_subunit_pseudouridine_synthase_d
+
−
** trna_pseudouridinesynthase
+
−
** trna_pseudouridine_synthase
+
−
** pseudouridylate_synthase
+
−
** pseudouridine_synthase_rlu_family_protein
+
−
** protein_pus7
+
−
** trna_pseudouridine_synthase_a
+
−
** pseudouridine
+
−
** rna_pseudouridylate_synthase_domain-containing_protein_1
+
−
** pseudouridine_synthase_1-like_protein
+
−
** trna_pseudouridine_synthase_d
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/5.4.99.12 EC-5.4.99.12]
+
** [http://enzyme.expasy.org/EC/1.3.7.12 EC-1.3.7.12]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[tRNA-uridine-38-40]][c] '''=>''' 1 [[tRNA-pseudouridine-38-40]][c]
+
** 2 [[Reduced-ferredoxins]][c] '''+''' 2 [[PROTON]][c] '''+''' 1 [[CPD-7063]][c] '''=>''' 2 [[Oxidized-ferredoxins]][c] '''+''' 1 [[CPD-7064]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 a uridine38-40 in tRNA[c] '''=>''' 1 a pseudouridine38-40 in tRNA[c]
+
** 2 a reduced ferredoxin [iron-sulfur] cluster[c] '''+''' 2 H+[c] '''+''' 1 red chlorophyll catabolite[c] '''=>''' 2 an oxidized ferredoxin [iron-sulfur] cluster[c] '''+''' 1 primary fluorescent chlorophyll catabolite[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_2851]]
+
* Gene: [[Tiso_gene_17975]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: AUTOMATED-NAME-MATCH
−
* [[Tiso_gene_7584]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_17798]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_3154]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_11913]]
+
−
** IN-SILICO_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_582]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_9833]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_17799]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_15274]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_18988]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_16656]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_18959]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_178]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_5651]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_11842]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_10567]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_1134]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_12093]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_18184]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_1548]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_12635]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_17745]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_18936]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_4703]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_2850]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_2988]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_19667]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_7417]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_13557]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_18028]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_4020]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_4021]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_18987]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_16727]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_5234]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_19622]]
+
−
** IN-SILICO_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_3970]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_3166]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY-5098]], chlorophyll a degradation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5098 PWY-5098]
 +
** '''1''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-6927]], chlorophyll a degradation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6927 PWY-6927]
 +
** '''1''' reactions found over '''5''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[orthology]]
 
−
** Source: [[orthology-esiliculosus]]
 
−
*** Tool: [[pantograph]]
 
 
* Category: [[annotation]]
 
* Category: [[annotation]]
−
** Source: [[annotation-experimental_annotation]]
 
−
*** Tool: [[pathwaytools]]
 
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24755 24755]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03020 R03020]
+
** [http://www.genome.jp/dbget-bin/www_bget?R09032 R09032]
−
* UNIPROT:
+
−
** [http://www.uniprot.org/uniprot/Q59069 Q59069]
+
−
** [http://www.uniprot.org/uniprot/P47428 P47428]
+
−
** [http://www.uniprot.org/uniprot/P45291 P45291]
+
−
** [http://www.uniprot.org/uniprot/Q45557 Q45557]
+
−
** [http://www.uniprot.org/uniprot/Q50291 Q50291]
+
−
** [http://www.uniprot.org/uniprot/P53167 P53167]
+
−
** [http://www.uniprot.org/uniprot/Q12211 Q12211]
+
−
** [http://www.uniprot.org/uniprot/P73295 P73295]
+
−
** [http://www.uniprot.org/uniprot/P07649 P07649]
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=drap_deaminase}}
+
{{#set: common name=red_chlorophyll_catabolite_reductase}}
−
{{#set: common name=pseudouridine_synthase_family_protein}}
+
{{#set: ec number=EC-1.3.7.12}}
−
{{#set: common name=ORF}}
+
{{#set: gene associated=Tiso_gene_17975}}
−
{{#set: common name=pseudouridine_synthase}}
+
{{#set: in pathway=PWY-5098|PWY-6927}}
−
{{#set: common name=Transmembrane_protein}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: common name=trna-pseudouridine_synthasei}}
+
{{#set: reconstruction source=annotation-in-silico_annotation}}
−
{{#set: common name=ribosomal_large_subunit_pseudouridine_synthase_d}}
+
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: common name=trna_pseudouridinesynthase}}
+
−
{{#set: common name=trna_pseudouridine_synthase}}
+
−
{{#set: common name=pseudouridylate_synthase}}
+
−
{{#set: common name=pseudouridine_synthase_rlu_family_protein}}
+
−
{{#set: common name=protein_pus7}}
+
−
{{#set: common name=trna_pseudouridine_synthase_a}}
+
−
{{#set: common name=pseudouridine}}
+
−
{{#set: common name=rna_pseudouridylate_synthase_domain-containing_protein_1}}
+
−
{{#set: common name=pseudouridine_synthase_1-like_protein}}
+
−
{{#set: common name=trna_pseudouridine_synthase_d}}
+
−
{{#set: ec number=EC-5.4.99.12}}
+
−
{{#set: gene associated=Tiso_gene_2851|Tiso_gene_7584|Tiso_gene_17798|Tiso_gene_3154|Tiso_gene_11913|Tiso_gene_582|Tiso_gene_9833|Tiso_gene_17799|Tiso_gene_15274|Tiso_gene_18988|Tiso_gene_16656|Tiso_gene_18959|Tiso_gene_178|Tiso_gene_5651|Tiso_gene_11842|Tiso_gene_10567|Tiso_gene_1134|Tiso_gene_12093|Tiso_gene_18184|Tiso_gene_1548|Tiso_gene_12635|Tiso_gene_17745|Tiso_gene_18936|Tiso_gene_4703|Tiso_gene_2850|Tiso_gene_2988|Tiso_gene_19667|Tiso_gene_7417|Tiso_gene_13557|Tiso_gene_18028|Tiso_gene_4020|Tiso_gene_4021|Tiso_gene_18987|Tiso_gene_16727|Tiso_gene_5234|Tiso_gene_19622|Tiso_gene_3970|Tiso_gene_3166}}
+
−
{{#set: in pathway=}}
+
−
{{#set: reconstruction category=orthology|annotation}}
+
−
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Revision as of 15:15, 21 March 2018

Reaction RXN-7741

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • red_chlorophyll_catabolite_reductase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 2 a reduced ferredoxin [iron-sulfur] cluster[c] + 2 H+[c] + 1 red chlorophyll catabolite[c] => 2 an oxidized ferredoxin [iron-sulfur] cluster[c] + 1 primary fluorescent chlorophyll catabolite[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5098, chlorophyll a degradation I: PWY-5098
    • 1 reactions found over 6 reactions in the full pathway
  • PWY-6927, chlorophyll a degradation II: PWY-6927
    • 1 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





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