Difference between revisions of "Actinorhodin-Intermediate-2"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIMETHYLGLYCINE-DEHYDROGENASE-RXN DIMETHYLGLYCINE-DEHYDROGENASE-RXN] == * direction: ** LEFT-TO-RIG...")
(Created page with "Category:Gene == Gene Tiso_gene_2889 == * right end position: ** 8172 * transcription direction: ** NEGATIVE * left end position: ** 5022 * centisome position: ** 27.82425...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIMETHYLGLYCINE-DEHYDROGENASE-RXN DIMETHYLGLYCINE-DEHYDROGENASE-RXN] ==
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== Gene Tiso_gene_2889 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 8172
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* common name:
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* transcription direction:
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** dimethylglycine_dehydrogenase
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** NEGATIVE
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* ec number:
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* left end position:
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** [http://enzyme.expasy.org/EC/1.5.8.4 EC-1.5.8.4]
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** 5022
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* centisome position:
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** 27.824255   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[ATPASE-RXN]]
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** 1 [[PROTON]][c] '''+''' 1 [[ETF-Oxidized]][c] '''+''' 1 [[DIMETHYL-GLYCINE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[SARCOSINE]][c] '''+''' 1 [[ETF-Reduced]][c] '''+''' 1 [[FORMALDEHYDE]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 H+[c] '''+''' 1 an oxidized electron-transfer flavoprotein[c] '''+''' 1 dimethylglycine[c] '''+''' 1 H2O[c] '''=>''' 1 sarcosine[c] '''+''' 1 a reduced electron-transfer flavoprotein[c] '''+''' 1 formaldehyde[c]
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* Reaction: [[NUCLEOSIDE-TRIPHOSPHATASE-RXN]]
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** Source: [[annotation-in-silico_annotation]]
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== Genes associated with this reaction  ==
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*** Assignment: ec-number
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[RXN-12195]]
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* [[Tiso_gene_2717]]
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** Source: [[annotation-in-silico_annotation]]
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** IN-SILICO_ANNOTATION
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*** Assignment: ec-number
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***AUTOMATED-NAME-MATCH
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* Reaction: [[RXN-12196]]
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== Pathways  ==
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** Source: [[annotation-in-silico_annotation]]
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* [[PWY-3661]], glycine betaine degradation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3661 PWY-3661]
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*** Assignment: ec-number
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** '''4''' reactions found over '''7''' reactions in the full pathway
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* Reaction: [[RXN0-5462]]
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== Reconstruction information  ==
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: ec-number
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== Pathways associated ==
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* [[PWY-7184]]
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* [[PWY-7198]]
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* [[PWY-6545]]
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* [[PWY-7210]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=8172}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22496 22496]
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{{#set: transcription direction=NEGATIVE}}
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* LIGAND-RXN:
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{{#set: left end position=5022}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01565 R01565]
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{{#set: centisome position=27.824255    }}
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* UNIPROT:
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{{#set: reaction associated=ATPASE-RXN|NUCLEOSIDE-TRIPHOSPHATASE-RXN|RXN-12195|RXN-12196|RXN0-5462}}
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** [http://www.uniprot.org/uniprot/Q63342 Q63342]
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{{#set: pathway associated=PWY-7184|PWY-7198|PWY-6545|PWY-7210}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=dimethylglycine_dehydrogenase}}
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{{#set: ec number=EC-1.5.8.4}}
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{{#set: gene associated=Tiso_gene_2717}}
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{{#set: in pathway=PWY-3661}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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Revision as of 15:16, 21 March 2018

Gene Tiso_gene_2889

  • right end position:
    • 8172
  • transcription direction:
    • NEGATIVE
  • left end position:
    • 5022
  • centisome position:
    • 27.824255
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Actinorhodin-Intermediate-2&oldid=33247"