Difference between revisions of "L-methionyl-glycyl-Protein"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7709 PWY-7709] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3398 TAX-33...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DTDPGLUCDEHYDRAT-RXN DTDPGLUCDEHYDRAT-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** amino...")
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7709 PWY-7709] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DTDPGLUCDEHYDRAT-RXN DTDPGLUCDEHYDRAT-RXN] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3398 TAX-3398]
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-4751 TAX-4751]
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* common name:
 
* common name:
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** (3R)-linalool biosynthesis
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** aminotransferase_s-adenosyl-l-homocysteine_hydrolase
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* ec number:
 +
** [http://enzyme.expasy.org/EC/4.2.1.46 EC-4.2.1.46]
 
* Synonym(s):
 
* Synonym(s):
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** (R)-linalool biosynthesis
 
  
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== Reaction(s) found ==
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== Reaction Formula ==
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  '''1''' reactions found over '''2''' reactions in the full pathway
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* With identifiers:
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* [[GPPSYN-RXN]]
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** 1 [[DTDP-D-GLUCOSE]][c] '''=>''' 1 [[WATER]][c] '''+''' 1 [[DTDP-DEOH-DEOXY-GLUCOSE]][c]
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** 9 associated gene(s):
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* With common name(s):
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*** [[Tiso_gene_19542]]
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** 1 dTDP-α-D-glucose[c] '''=>''' 1 H2O[c] '''+''' 1 dTDP-4-dehydro-6-deoxy-α-D-glucopyranose[c]
−
*** [[Tiso_gene_18201]]
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*** [[Tiso_gene_16284]]
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== Genes associated with this reaction  ==
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*** [[Tiso_gene_2848]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[Tiso_gene_1035]]
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* Gene: [[Tiso_gene_7329]]
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*** [[Tiso_gene_4719]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[Tiso_gene_11582]]
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*** Assignment: EC-NUMBER
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*** [[Tiso_gene_13582]]
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** Source: [[orthology-synechocystis]]
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*** [[Tiso_gene_10317]]
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** Source: [[orthology-esiliculosus]]
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** 5 reconstruction source(s) associated:
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* Gene: [[Tiso_gene_12394]]
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*** [[orthology-athaliana]]
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** Source: [[orthology-athaliana]]
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*** [[orthology-creinhardtii]]
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** Source: [[orthology-synechocystis]]
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*** [[orthology-synechocystis]]
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** Source: [[orthology-esiliculosus]]
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*** [[orthology-esiliculosus]]
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== Pathways ==
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*** [[manual-primary_network]]
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* [[PWY-7315]], dTDP-N-acetylthomosamine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7315 PWY-7315]
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== Reaction(s) not found ==
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** '''2''' reactions found over '''4''' reactions in the full pathway
−
* [http://metacyc.org/META/NEW-IMAGE?object=4.2.3.26-RXN 4.2.3.26-RXN]
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* [[PWY-7316]], dTDP-N-acetylviosamine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7316 PWY-7316]
 +
** '''2''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-7301]], dTDP-4-O-demethyl-β-L-noviose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7301 PWY-7301]
 +
** '''2''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-7657]], dTDP-β-L-digitoxose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7657 PWY-7657]
 +
** '''2''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-7312]], dTDP-D-β-fucofuranose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7312 PWY-7312]
 +
** '''2''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-7318]], dTDP-3-acetamido-3,6-dideoxy-α-D-glucose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7318 PWY-7318]
 +
** '''2''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-6942]], dTDP-D-desosamine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6942 PWY-6942]
 +
** '''2''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-7104]], dTDP-L-megosamine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7104 PWY-7104]
 +
** '''2''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-7814]], dTDP-L-daunosamine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7814 PWY-7814]
 +
** '''2''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-7440]], dTDP-β-L-4-epi-vancosamine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7440 PWY-7440]
 +
** '''2''' reactions found over '''8''' reactions in the full pathway
 +
* [[DTDPRHAMSYN-PWY]], dTDP-L-rhamnose biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=DTDPRHAMSYN-PWY DTDPRHAMSYN-PWY]
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-6953]], dTDP-3-acetamido-α-D-fucose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6953 PWY-6953]
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** '''2''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-6808]], dTDP-D-forosamine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6808 PWY-6808]
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** '''2''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-7413]], dTDP-6-deoxy-α-D-allose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7413 PWY-7413]
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** '''2''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-6976]], dTDP-L-mycarose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6976 PWY-6976]
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** '''2''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-7688]], dTDP-D-ravidosamine and dTDP-4-acetyl-D-ravidosamine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7688 PWY-7688]
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** '''2''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-6974]], dTDP-L-olivose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6974 PWY-6974]
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** '''2''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-6973]], dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6973 PWY-6973]
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** '''2''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-3221]], dTDP-L-rhamnose biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3221 PWY-3221]
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** '''2''' reactions found over '''3''' reactions in the full pathway
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* [[PWY-7414]], dTDP-α-D-mycaminose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7414 PWY-7414]
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** '''2''' reactions found over '''5''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-synechocystis]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: taxonomic range=TAX-3398}}
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* RHEA:
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{{#set: taxonomic range=TAX-4751}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17221 17221]
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{{#set: common name=(3R)-linalool biosynthesis}}
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* LIGAND-RXN:
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{{#set: common name=(R)-linalool biosynthesis}}
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** [http://www.genome.jp/dbget-bin/www_bget?R06513 R06513]
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{{#set: reaction found=1}}
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* UNIPROT:
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{{#set: total reaction=2}}
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** [http://www.uniprot.org/uniprot/Q9R5L1 Q9R5L1]
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{{#set: completion rate=50.0}}
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** [http://www.uniprot.org/uniprot/P44914 P44914]
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** [http://www.uniprot.org/uniprot/P29782 P29782]
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** [http://www.uniprot.org/uniprot/P27830 P27830]
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** [http://www.uniprot.org/uniprot/P55294 P55294]
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** [http://www.uniprot.org/uniprot/Q9S642 Q9S642]
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** [http://www.uniprot.org/uniprot/P37759 P37759]
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** [http://www.uniprot.org/uniprot/P26391 P26391]
 +
** [http://www.uniprot.org/uniprot/Q59626 Q59626]
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** [http://www.uniprot.org/uniprot/P39630 P39630]
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** [http://www.uniprot.org/uniprot/P37777 P37777]
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** [http://www.uniprot.org/uniprot/P37761 P37761]
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** [http://www.uniprot.org/uniprot/Q54144 Q54144]
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** [http://www.uniprot.org/uniprot/Q56173 Q56173]
 +
** [http://www.uniprot.org/uniprot/Q55420 Q55420]
 +
** [http://www.uniprot.org/uniprot/P55293 P55293]
 +
** [http://www.uniprot.org/uniprot/O66249 O66249]
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** [http://www.uniprot.org/uniprot/Q9RMC4 Q9RMC4]
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** [http://www.uniprot.org/uniprot/O08246 O08246]
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** [http://www.uniprot.org/uniprot/Q9RR28 Q9RR28]
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** [http://www.uniprot.org/uniprot/Q9SMJ5 Q9SMJ5]
 +
{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=aminotransferase_s-adenosyl-l-homocysteine_hydrolase}}
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{{#set: ec number=EC-4.2.1.46}}
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{{#set: gene associated=Tiso_gene_7329|Tiso_gene_12394}}
 +
{{#set: in pathway=PWY-7315|PWY-7316|PWY-7301|PWY-7657|PWY-7312|PWY-7318|PWY-6942|PWY-7104|PWY-7814|PWY-7440|DTDPRHAMSYN-PWY|PWY-6953|PWY-6808|PWY-7413|PWY-6976|PWY-7688|PWY-6974|PWY-6973|PWY-3221|PWY-7414}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=orthology-athaliana|annotation-in-silico_annotation|orthology-synechocystis|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 15:16, 21 March 2018

Reaction DTDPGLUCDEHYDRAT-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • aminotransferase_s-adenosyl-l-homocysteine_hydrolase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7315, dTDP-N-acetylthomosamine biosynthesis: PWY-7315
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-7316, dTDP-N-acetylviosamine biosynthesis: PWY-7316
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-7301, dTDP-4-O-demethyl-β-L-noviose biosynthesis: PWY-7301
    • 2 reactions found over 5 reactions in the full pathway
  • PWY-7657, dTDP-β-L-digitoxose biosynthesis: PWY-7657
    • 2 reactions found over 7 reactions in the full pathway
  • PWY-7312, dTDP-D-β-fucofuranose biosynthesis: PWY-7312
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-7318, dTDP-3-acetamido-3,6-dideoxy-α-D-glucose biosynthesis: PWY-7318
    • 2 reactions found over 5 reactions in the full pathway
  • PWY-6942, dTDP-D-desosamine biosynthesis: PWY-6942
    • 2 reactions found over 6 reactions in the full pathway
  • PWY-7104, dTDP-L-megosamine biosynthesis: PWY-7104
    • 2 reactions found over 8 reactions in the full pathway
  • PWY-7814, dTDP-L-daunosamine biosynthesis: PWY-7814
    • 2 reactions found over 6 reactions in the full pathway
  • PWY-7440, dTDP-β-L-4-epi-vancosamine biosynthesis: PWY-7440
    • 2 reactions found over 8 reactions in the full pathway
  • DTDPRHAMSYN-PWY, dTDP-L-rhamnose biosynthesis I: DTDPRHAMSYN-PWY
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-6953, dTDP-3-acetamido-α-D-fucose biosynthesis: PWY-6953
    • 2 reactions found over 5 reactions in the full pathway
  • PWY-6808, dTDP-D-forosamine biosynthesis: PWY-6808
    • 2 reactions found over 9 reactions in the full pathway
  • PWY-7413, dTDP-6-deoxy-α-D-allose biosynthesis: PWY-7413
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-6976, dTDP-L-mycarose biosynthesis: PWY-6976
    • 2 reactions found over 7 reactions in the full pathway
  • PWY-7688, dTDP-D-ravidosamine and dTDP-4-acetyl-D-ravidosamine biosynthesis: PWY-7688
    • 2 reactions found over 6 reactions in the full pathway
  • PWY-6974, dTDP-L-olivose biosynthesis: PWY-6974
    • 2 reactions found over 7 reactions in the full pathway
  • PWY-6973, dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis: PWY-6973
    • 2 reactions found over 9 reactions in the full pathway
  • PWY-3221, dTDP-L-rhamnose biosynthesis II: PWY-3221
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-7414, dTDP-α-D-mycaminose biosynthesis: PWY-7414
    • 2 reactions found over 5 reactions in the full pathway

Reconstruction information

External links





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