Difference between revisions of "OXALACETIC ACID"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-5286 RXN-5286] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/1....")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=THI-P-SYN-RXN THI-P-SYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF ** thiamine_mon...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-5286 RXN-5286] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=THI-P-SYN-RXN THI-P-SYN-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 +
* common name:
 +
** ORF
 +
** thiamine_monophosphate_synthase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.3.1.75 EC-1.3.1.75]
+
** [http://enzyme.expasy.org/EC/2.5.1.3 EC-2.5.1.3]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[DIVINYLCHLOROPHYLLIDE-A]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CHLOROPHYLLIDE-A]][c] '''+''' 1 [[NADP]][c]
+
** 1 [[AMINO-HYDROXYMETHYL-METHYLPYRIMIDINE-PP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[THZ-P]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[THIAMINE-P]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 3,8-divinyl chlorophyllide a[c] '''+''' 1 NADPH[c] '''+''' 1 H+[c] '''=>''' 1 chlorophyllide a[c] '''+''' 1 NADP+[c]
+
** 1 4-amino-2-methyl-5-(diphosphomethyl)pyrimidine[c] '''+''' 1 H+[c] '''+''' 1 4-methyl-5-(2-phosphooxyethyl)thiazole[c] '''=>''' 1 diphosphate[c] '''+''' 1 thiamine phosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_13868]]
+
* Gene: [[Tiso_gene_10320]]
−
** [[pantograph]]-[[creinhardtii]]
+
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_2159]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_2160]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-esiliculosus]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-5526]], bacteriochlorophyll a biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5526 PWY-5526]
+
* [[PWY-6897]], thiamine salvage II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6897 PWY-6897]
−
** '''1''' reactions found over '''13''' reactions in the full pathway
+
** '''3''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-7758]], bacteriochlorophyll d biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7758 PWY-7758]
+
* [[PWY-6908]], thiamine diphosphate biosynthesis IV (eukaryotes): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6908 PWY-6908]
−
** '''1''' reactions found over '''14''' reactions in the full pathway
+
** '''3''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY-7759]], bacteriochlorophyll c biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7759 PWY-7759]
+
* [[PWY-7356]], thiamine salvage IV (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7356 PWY-7356]
−
** '''1''' reactions found over '''18''' reactions in the full pathway
+
** '''5''' reactions found over '''7''' reactions in the full pathway
−
* [[PWY-5064]], chlorophyll a biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5064 PWY-5064]
+
* [[PWY-7357]], thiamine formation from pyrithiamine and oxythiamine (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7357 PWY-7357]
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
** '''3''' reactions found over '''6''' reactions in the full pathway
−
* [[PWY-5086]], chlorophyll a biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5086 PWY-5086]
+
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
−
* [[PWY-7760]], bacteriochlorophyll e biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7760 PWY-7760]
+
−
** '''1''' reactions found over '''26''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
−
** Source: [[orthology-creinhardtii]]
+
** Source: [[orthology-athaliana]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
−
* Category: [[manual]]
+
** Source: [[orthology-esiliculosus]]
−
** Source: [[manual-primary_network]]
+
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14449 14449]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22328 22328]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R06272 R06272]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03223 R03223]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P41835 P41835]
 +
** [http://www.uniprot.org/uniprot/P71350 P71350]
 +
** [http://www.uniprot.org/uniprot/O25514 O25514]
 +
** [http://www.uniprot.org/uniprot/Q9PNL3 Q9PNL3]
 +
** [http://www.uniprot.org/uniprot/Q9JWI2 Q9JWI2]
 +
** [http://www.uniprot.org/uniprot/Q9ZL01 Q9ZL01]
 +
** [http://www.uniprot.org/uniprot/P30137 P30137]
 +
** [http://www.uniprot.org/uniprot/P39594 P39594]
 +
** [http://www.uniprot.org/uniprot/P40386 P40386]
 +
** [http://www.uniprot.org/uniprot/P72965 P72965]
 +
** [http://www.uniprot.org/uniprot/O48881 O48881]
 +
** [http://www.uniprot.org/uniprot/O34294 O34294]
 +
** [http://www.uniprot.org/uniprot/Q9ZBL5 Q9ZBL5]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: ec number=EC-1.3.1.75}}
+
{{#set: common name=ORF}}
−
{{#set: gene associated=Tiso_gene_13868}}
+
{{#set: common name=thiamine_monophosphate_synthase}}
−
{{#set: in pathway=PWY-5526|PWY-7758|PWY-7759|PWY-5064|PWY-5086|PWY-7760}}
+
{{#set: ec number=EC-2.5.1.3}}
−
{{#set: reconstruction category=orthology|manual}}
+
{{#set: gene associated=Tiso_gene_10320|Tiso_gene_2159|Tiso_gene_2160}}
−
{{#set: reconstruction source=manual-primary_network|orthology-creinhardtii}}
+
{{#set: in pathway=PWY-6897|PWY-6908|PWY-7356|PWY-7357}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=orthology-athaliana|annotation-in-silico_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 15:17, 21 March 2018

Reaction THI-P-SYN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • ORF
    • thiamine_monophosphate_synthase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6897, thiamine salvage II: PWY-6897
    • 3 reactions found over 5 reactions in the full pathway
  • PWY-6908, thiamine diphosphate biosynthesis IV (eukaryotes): PWY-6908
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-7356, thiamine salvage IV (yeast): PWY-7356
    • 5 reactions found over 7 reactions in the full pathway
  • PWY-7357, thiamine formation from pyrithiamine and oxythiamine (yeast): PWY-7357
    • 3 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





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