Difference between revisions of "Tiso gene 1666"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=METHYLENETHFDEHYDROG-NADP-RXN METHYLENETHFDEHYDROG-NADP-RXN] == * direction: ** REVERSIBLE * common...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN66-576 RXN66-576] == * direction: ** LEFT-TO-RIGHT * common name: ** dimethylglycine_dehydrogena...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=METHYLENETHFDEHYDROG-NADP-RXN METHYLENETHFDEHYDROG-NADP-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN66-576 RXN66-576] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** ORF
+
** dimethylglycine_dehydrogenase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.5.1.5 EC-1.5.1.5]
+
** [http://enzyme.expasy.org/EC/1.5.8 EC-1.5.8]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[METHYLENE-THF-GLU-N]][c] '''+''' 1 [[NADP]][c] '''<=>''' 1 [[5-10-METHENYL-THF-GLU-N]][c] '''+''' 1 [[NADPH]][c]
+
** 1 [[DIMETHYL-GLYCINE]][c] '''+''' 1 [[THF-GLU-N]][c] '''+''' 2 [[ETF-Oxidized]][c] '''+''' 3 [[PROTON]][c] '''=>''' 2 [[ETF-Reduced]][c] '''+''' 1 [[5-10-METHENYL-THF-GLU-N]][c] '''+''' 1 [[SARCOSINE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 a 5,10-methylene-tetrahydrofolate[c] '''+''' 1 NADP+[c] '''<=>''' 1 a 5,10-methenyltetrahydrofolate[c] '''+''' 1 NADPH[c]
+
** 1 dimethylglycine[c] '''+''' 1 a tetrahydrofolate[c] '''+''' 2 an oxidized electron-transfer flavoprotein[c] '''+''' 3 H+[c] '''=>''' 2 a reduced electron-transfer flavoprotein[c] '''+''' 1 a 5,10-methenyltetrahydrofolate[c] '''+''' 1 sarcosine[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_432]]
+
* Gene: [[Tiso_gene_2717]]
−
** [[pantograph]]-[[esiliculosus]]
+
** Source: [[annotation-in-silico_annotation]]
−
* [[Tiso_gene_6004]]
+
*** Assignment: AUTOMATED-NAME-MATCH
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-1722]], formate assimilation into 5,10-methylenetetrahydrofolate: [http://metacyc.org/META/NEW-IMAGE?object=PWY-1722 PWY-1722]
+
* [[PWY-3661-1]], glycine betaine degradation II (mammalian): [http://metacyc.org/META/NEW-IMAGE?object=PWY-3661-1 PWY-3661-1]
−
** '''3''' reactions found over '''3''' reactions in the full pathway
+
** '''3''' reactions found over '''4''' reactions in the full pathway
−
* [[PWY-3841]], folate transformations II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3841 PWY-3841]
+
−
** '''9''' reactions found over '''11''' reactions in the full pathway
+
−
* [[1CMET2-PWY]], N10-formyl-tetrahydrofolate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=1CMET2-PWY 1CMET2-PWY]
+
−
** '''7''' reactions found over '''9''' reactions in the full pathway
+
−
* [[CODH-PWY]], reductive acetyl coenzyme A pathway I (homoacetogenic bacteria): [http://metacyc.org/META/NEW-IMAGE?object=CODH-PWY CODH-PWY]
+
−
** '''5''' reactions found over '''9''' reactions in the full pathway
+
−
* [[PWY-5497]], purine nucleobases degradation II (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5497 PWY-5497]
+
−
** '''7''' reactions found over '''24''' reactions in the full pathway
+
−
* [[PWY-2201]], folate transformations I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2201 PWY-2201]
+
−
** '''7''' reactions found over '''12''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[orthology]]
 
−
** Source: [[orthology-esiliculosus]]
 
−
*** Tool: [[pantograph]]
 
−
* Category: [[manual]]
 
−
** Source: [[manual-primary_network]]
 
 
* Category: [[annotation]]
 
* Category: [[annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: direction=LEFT-TO-RIGHT}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22812 22812]
+
{{#set: common name=dimethylglycine_dehydrogenase}}
−
* LIGAND-RXN:
+
{{#set: ec number=EC-1.5.8}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01220 R01220]
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{{#set: gene associated=Tiso_gene_2717}}
−
* UNIPROT:
+
{{#set: in pathway=PWY-3661-1}}
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** [http://www.uniprot.org/uniprot/P09440 P09440]
+
{{#set: reconstruction category=annotation}}
−
** [http://www.uniprot.org/uniprot/P07245 P07245]
+
{{#set: reconstruction source=annotation-in-silico_annotation}}
−
** [http://www.uniprot.org/uniprot/P11586 P11586]
+
{{#set: reconstruction tool=pathwaytools}}
−
** [http://www.uniprot.org/uniprot/P44313 P44313]
+
−
** [http://www.uniprot.org/uniprot/P47259 P47259]
+
−
** [http://www.uniprot.org/uniprot/P54382 P54382]
+
−
** [http://www.uniprot.org/uniprot/O67736 O67736]
+
−
** [http://www.uniprot.org/uniprot/Q9JWI9 Q9JWI9]
+
−
** [http://www.uniprot.org/uniprot/Q9PP68 Q9PP68]
+
−
** [http://www.uniprot.org/uniprot/P24186 P24186]
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−
** [http://www.uniprot.org/uniprot/Q60006 Q60006]
+
−
** [http://www.uniprot.org/uniprot/Q27772 Q27772]
+
−
** [http://www.uniprot.org/uniprot/P51696 P51696]
+
−
** [http://www.uniprot.org/uniprot/O65269 O65269]
+
−
** [http://www.uniprot.org/uniprot/O65271 O65271]
+
−
** [http://www.uniprot.org/uniprot/O68031 O68031]
+
−
** [http://www.uniprot.org/uniprot/Q9ZTV0 Q9ZTV0]
+
−
** [http://www.uniprot.org/uniprot/Q9X7F6 Q9X7F6]
+
−
{{#set: direction=REVERSIBLE}}
+
−
{{#set: common name=ORF}}
+
−
{{#set: ec number=EC-1.5.1.5}}
+
−
{{#set: gene associated=Tiso_gene_432|Tiso_gene_6004}}
+
−
{{#set: in pathway=PWY-1722|PWY-3841|1CMET2-PWY|CODH-PWY|PWY-5497|PWY-2201}}
+
−
{{#set: reconstruction category=orthology|manual|annotation}}
+
−
{{#set: reconstruction source=manual-primary_network|annotation-in-silico_annotation|orthology-esiliculosus}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Revision as of 15:23, 21 March 2018

Reaction RXN66-576

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • dimethylglycine_dehydrogenase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-3661-1, glycine betaine degradation II (mammalian): PWY-3661-1
    • 3 reactions found over 4 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_1666&oldid=33943"